Detailed information on CNT30628168


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098913Daucus carotaSolanum tuberosum100.3992.3195.641284forward
CNT30308919Daucus carotaTriticum aestivum94.5376.7695.041209forward

Expression of CNT30628168

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MARSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTW*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYDVIPC*

>peptide 3 (41 aa)
ETLLRLLLPLNDKVQWTSFDVASSKPPTSPQSEHFTGPFNR*

>peptide 4 (44 aa)
MKFQRFPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 5 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

>peptide 6 (43 aa)
MIRFSGLLSTSQAANRPRRRNPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT30628168
GAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTTTCGACGTCGCAAGCAGCAAACCGCCCACGTCGCCGCAATCCGAAC
ACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTC
CTCGTTTAAGACCAACAATTGTAATGATCTATCCCCATCACGATGAAATTTCAAAGATTTCCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACA
TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAG
CTGGCCGTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGC
CATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGGCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCA
ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAG
TCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTG
ATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCG
AGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGA
AATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTAT
ACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGACAGGAGCGCATCGCCGGCAGAA
GGGACGAGGCGACCGGTGCACACCAAACGGCGGACCGGCCGACCCAACCCAAAGTCCAACTACGAGCTTTTTTTTTTTT