Detailed information on CNT30628164


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730415Daucus carotaCorchorus capsularis48.69100.8297.22612forward
CNT30638954Daucus carotaCapsicum annuum64.9283.9596.45816forward
CNT30568468Daucus carotaActinidia chinensis55.5398.5996.99698forward
CNT30309523Daucus carotaCamelina sativa74.4651.8696.58936forward
CNT30705838Daucus carotaPrunus avium83.1363.2295.51045forward
CNT3049178Daucus carotaCucumis sativus66.2796.9796.16833forward

Expression of CNT30628164

Peptides detected in this lncRNA

>peptide 1 (77 aa)
RQGTKGPQLLARCCYMLTSHSGITGFDNDPSAGSPTETLLRLLLPLNDKVQWTSFDVASSKPPTSPQSEHFTGPFNR*

>peptide 2 (33 aa)
MSGPGKLHSWWCPSVNSFKFQPCDHTPPGTQKL*

>peptide 3 (44 aa)
MIRFSGLLSTSQAANRPRRRNPNTSPDHSIGRSDGRRCVQRAGT*

>peptide 4 (44 aa)
MKFQRFPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 5 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYDVIPC*

>peptide 6 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

Sequence

>CNT30628164
AGACAGGGGACCAAAGGCCCACAGTTGCTTGCCCGTTGTTGTTACATGTTAACAAGTCATTCTGGTATCACAGGATTCGACAATGATCCTTCCGCAGGTT
CACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTTTCGACGTCGCAAGCAGCAAACCGCCCACGTCGCCGCA
ATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTT
ACTAGGAATTCCTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTTCCCGGGCCTGTCGGCCAAGGCTATAGACT
CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTC
CCTCTAAGAAGCTGGCCGTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGGCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAA
CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGCTCCACTCCTGGTGGT
GCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAG
CAACATCCACTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAAC
ATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCA
TTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATT
TCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGACAGGAGCGCATCGCCGGCAGAAGGGACGAGGCGACCGGTGCACACCAAACGGCGG
ACCGGCCGACCCAACCCAAAGTCCAACTACGAGCTTTTTTTTTTTTGCTAATTTGTT