« Back to Daucus carota search


Detailed information on CNT30627909


BLAST search results

BLAST vs Swiss-Prot:
sp|P15688|NU2M_BETVU, E-value = 1e-133

BLAST vs NONCODE:
NONORUT000579, E-value = 2e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374346Daucus carotaArabidopsis thaliana89.3731.9595.661244forward
CNT3019915Daucus carotaCitrullus lanatus7.3329.9198.04102reverse complement
CNT30708112Daucus carotaGlycine max8.7640.6795.08122forward
CNT30393404Daucus carotaTriticum turgidum58.1969.1794.32810forward
CNT30592538Daucus carotaMusa acuminata28.6638.793.48399forward
CNT3086242Daucus carotaVigna radiata7.3327.286.27102reverse complement
CNT30664613Daucus carotaTriticum dicoccoides11.1440.1695.48155forward
CNT30680683Daucus carotaTriticum urartu37.93100.3894.7528forward
CNT30574572Daucus carotaVitis vinifera79.8116.596.851111forward
CNT30705826Daucus carotaPrunus avium15.5966.3696.77217forward
CNT30551547Daucus carotaOryza brachyantha29.5395.5894.65411forward

Expression of CNT30627909

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSSAASPPNFFYPRPFRMRFARHWRFALLLFFIGRFGWTSPFFPNINLKGCITSRCRFVFRPQ*

>peptide 2 (44 aa)
MDFAVLSQHKFKRLYHIEMSIRFPPPMRWGICNPLFRLFGPSSF*

>peptide 3 (41 aa)
MEKVIAEIGFVLARAPKSAIYLTRVCRNAETMANASIVIDA*

>peptide 4 (34 aa)
MRNQYEYNLHVQLNYELEVFLLSFGPWRPVLLRS*

Sequence

>CNT30627909
AAAAGGATTTATATAGTTAAGTAGCGTAGCAAGAAGCCCCAAATCCTTGATTTGGCCAGGAAAGACTGCACTGCTTTGGGCCCAGGAAGCGAAGGGAATG
AGCTCGGCTGCTTCTCCTCCAAACTTTTTTTATCCGCGCCCGTTTCGCATGCGCTTCGCGCGCCATTGGCGCTTTGCTCTCCTCTTATTCTTCATTGGAC
GGTTCGGATGGACTTCGCCGTTCTTTCCCAACATAAATTTAAAAGGCTGTATCACATCGAGATGTCGATTCGTTTTCCGCCCCCAATGAGATGGGGAATT
TGTAACCCCCTATTTAGACTTTTTGGCCCTTCATCTTTCTGAATCGAGACCCGGCCCGGCTCGCGTCGTTCCAACAACCGGCGGGGAGCACCTCAGTCTA
CGATCGTGCGCAGTAACTGGGAGTCCTATTACACCTAAGGCCAACTTCAATTCACCAAACCAAGGTTCATCTCGTGTAGTGATTGTGAACTCGTACAAGG
ATATTGAGTAGACGGTTGATGTATCAGACTCGACCCTATCTTTCGTAGCATGCATTCCCATCCGTGTCGCAACTGATTCGGTAAGCTACGTGTCCGGTGC
ACGGAGAACTGCCTTCGGTCCCCCAAACTGACTTACTCGTGGCAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCACTATTCCCACTGGGGCTAGG
AAGTAAGCCCCACAACCCAAAGCGGCAAAAAACAAATAGAATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCTGCGTATGAGAACATAGTAATGGAGA
AGGTAATAGCCGAAATAGGATTCGTTTTGGCTAGAGCGCCCAAATCCGCTATATATTTGACACGGGTTTGCCGTAATGCTGAAACTATGGCGAATGCATC
TATCGTCATTGATGCATAAATAAAGATACCAATTAGTAGTGATTGAATCCCTTCTATGGTTCCGCATGAGAAACCAGTACGAATATAACCTACATGTCCA
ATTGAACTATGAGCTAGAAGTCTTTTTACTTTCGTTTGGGCCATGGCGGCCAGTGCTCCTAAGATCATAGAAGCAATGCTGCAGAAAAAGAAGATTTGTT
GCAATGTAGCTCCATAAGAACCATAAATAGAAACACGTGAAATATTAGCAGAAATCGAGATTTTAGGCGCAATAGAAAGGAATGCTGTAACCGGGGTGGG
TGAACCCTCATAGATATCAGGTGCCCACATATATAGAGAACTGCAGTGATCTTGAATAGGGATCCTACAGCGATAGATAGAATCCCCATAAAAATACCAC
TAGATCGAGCACCAGTGATTTCGTATCCGGTCAAAATCTTGGCTAATTGATCAAAGTGGGTAGCTCCAGTAGACCCATAGATCATGGAACAA