« Back to Daucus carota search


Detailed information on CNT30627905


BLAST search results

BLAST vs Swiss-Prot:
sp|Q35639|NU5M_PEA, E-value = 2e-117

BLAST vs NONCODE:
NONATHT001124, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269710Daucus carotaChenopodium quinoa10.1660.7196.86255forward
CNT30162048Daucus carotaPistacia vera9.1282.9796.94229reverse complement
CNT30226250Daucus carotaHordeum vulgare17.1632.6893.97431forward
CNT30389925Daucus carotaTriticum turgidum39.3570.2795.65988forward
CNT3089649Daucus carotaVigna radiata29.2389.9596.46734forward
CNT30605136Daucus carotaGossypium raimondii9.254.2389.61231forward
CNT30655408Daucus carotaRosa chinensis23.7410096.31596forward
CNT30679240Daucus carotaTriticum urartu48.5183.294.831218forward
CNT30481824Daucus carotaChara braunii2.4720.0688.7162reverse complement
CNT30418333Daucus carotaPapaver somniferum9.0829.3895.18228forward
CNT30104358Daucus carotaOryza rufipogon2.5523.5310064reverse complement
CNT30725625Daucus carotaLupinus angustifolius38.5155.6198.24967forward

Expression of CNT30627905

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIEARTLSGQVPLIDHNDIVEMLHGPIYIEKETESP*

>peptide 2 (30 aa)
MRRQAPPSSAYLAHPTWHESPNPHSGIVML*

>peptide 3 (54 aa)
MTLFRSFCNIPVVAARNDVIAPAKVITIKAVGGYSNKGEHLAIMKTPAVTIVAA*

>peptide 4 (38 aa)
MDVTTINITTVGLSNTGSPKKHQTFPMRSMEQFLDSKH*

>peptide 5 (71 aa)
MQLRGPLVGPDRWWYYTLLKGTVRETLASYGSAPESGPPLSFDQRVLEPTCPPFLFLGQRFLFIHSLIDSR*

Sequence

>CNT30627905
CAGTGCGTAAAGATCACATCTTTTGAATAAAATCCAGTTGGAAAAGGAAATCCAATTAGAGATAAGCTGCCCATGAGCATCATGGCATAGGTAAAAGGGA
ATGAGGAGGCAAGCCCCCCCATCTTCCGCATATCTTGCTCATCCGACATGGCATGAATCACCGAACCCGCACTCAGGAATAGTAATGCTTTGAAAAAGGC
GTGATTCATTAAGTGAAAGACGCTAACCGAATAGTTAGAGATGCCGCAAGCAAAGATCATATAGCCTAATTGACTGCAAGTTGAATAAGCTATGACCCTC
TTTAGATCGTTCTGTAATATTCCAGTGGTTGCCGCAAGGAATGACGTCATAGCTCCTGCAAAAGTAATAACAATCAAAGCCGTAGGCGGGTATTCAAATA
AAGGGGAGCACCTTGCTATCATGAAAACGCCAGCTGTTACCATAGTAGCTGCATGAATCAAAGCGGATACTGGAGTGGGACCCTCCATAGCATCGGGTGA
CCAAGTATGCGATCCTATCTGTGCAGATTTCCCAACAGCACCAATAAGAAGTAAAATACAAATAAGAGTTATGGCATTCAATCTCATATTGCGAGAAATC
CAAGAATTTCTGGGGGCACTAGCACGAGCAAAAATGGTTGAAAAGTCTACTGTTTGAAAGAGAGTAAAACAACCCGAAATCCCAGGAGCTAATCCAAAAT
CACCTACTCGATTGACAAGCATAGCTTTTATAGCTGCTTTATCTGCCTGAAGTCGTGTAAACCAGAAATGAATTAACAAATATGAAGCAAGACCTACTCC
CTCCCATCCCAGGAATAATTGAAGAGAGTTATCTCCAGTCACCAACATTGGCATAAAAAAAGTAGGAATGGATAAATAACACATAAATCGAGGGCTATGC
GGATCCTCAGACATATATGAAATGGAATAAAGATGGACCAAGCTACTTATGGATGTAACCACAATTAACATCACTACGGTCGGGCTATCGAACACGGGAA
GCCCCAAGAAGCATCAAACATTTCCGATGAGATCCATGGAGCAATTCTTAGATAGCAAGCACTAGCTCCCGGTGCGACTTCATAAAAAGCAATCAAAGAT
AAGATCGAAGAGAATGAAAGGCACGTAGTGGTTATTATAGCGGTTCCTTCTGATCCTAGAAAACGTCCGAAAAAACCTGCTACGGAACTACCGAGCAGGG
GCAAAAATACGATAAGTAGATACATAATTTCGAGTGTGATCAGACAACCAAAAATCAGACAATGAAAAGAGCGGCCTGTGATTTTGAGTGATAGATTGAT
CGACGCCCGAAGAGCGCTCGACCGAAGGAATGAGTCACAAGGTGGATTTTTAGCCCCAACGACAAAGGAACCTACGGGCGGGGCATTTTCGGGGAGTAGC
CCGCTTCCCATTACTCACTAGGGCAATTCCTCGCACATAATTAAGGGAGCCATTGAAAGGTGACTAAAACACCAGAAACGGGGACTACCCGAGCTAATGA
TAGAGGCAAGAACACTTTCCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACCCATATATATAGAAAAGGAAACAGAATC
ACCTTGATACTAAACCGGATCGAGCCCGGGATCTTCTTGGAAATGGGAAGATCTAGGAAAGGCGGCCAACCTCCTGGAGAGAGCGATGTGCATGGACCAG
GTGAGTAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATTACACCCTTCTCAAAGGAACCGTACGTGAGACTCTCGCGTCATAC
GGCTCCGCCCCGGAATCAGGACCCCCCCTTTCCTTTGACCAACGGGTCCTCGAACCAACCTGTCCTCCCTTTCTCTTTCTCGGTCAGCGGTTCCTTTTCA
TTCATTCATTGATTGATTCAAGGTAGCTTGCTTCCAACAAGTCCAAGCGCTAGCGGTAGAAGCTAGTCGTCAGAAGCTAACTTCCGGGCCGGGACGGAGC
CAAAAAACGTGAGCGCCCCTGCGCTAGCTGCAATCAAACTAAAGCAAGAAGGGAGGGCGCTTGTTGCCGCTTTATTAATTAGTAAGTAAGCTTGTTCAGG
CGAAAGGTTGCTTTACTAAGATTCTAATATAAGGCGCGTTAGCGCTTTAGAAAGATTGCTCGTTAGCTAGGCCGTTTTCAATAAGGACGTTTAGTCTTGA
CTAATAAGATAGAAAGGGCTTTTCTCGCTTAGTATTGCTTTGGCTTCGCCGTATCTTGCTGGCGCAGAAGCTACCGCAACTAAAAGAAAATGCATTAAGG
CATTACATTAGAAAGACTACAGAGGCATTCCGGGCCGACTACAAGACTACGACTACAATACAAGTCATGAGCGATAGCGAAGCCAAGTCGGAGCGGCTTT
TTTATGTCGAAAGCCCCAAAACTCGCTATCTTATAGCAGACAACTAACGCAAGCCTAAAAAACGAATCTCATAAGTAAAGGCCTGTTCGCATCGCAACTA
ATAGAAAAAAC