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Detailed information on CNT30627902


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0G9W2|PSAA_DAUCA, E-value = 1e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Daucus carotaOryza sativa58.979.4588.4526forward
CNT30675574Daucus carotaSetaria viridis15.2558.6287.5136forward
CNT30526549Daucus carotaPhaseolus vulgaris35.0947.4287.86313forward
CNT30201935Daucus carotaPisum sativum59.331.0492.82529forward
CNT30224362Daucus carotaHordeum vulgare50.2228.2188.84448forward
CNT30145466Daucus carotaMedicago truncatula13.5733.786.78121forward
CNT301761Daucus carotaZea mays58.979.2888.21526forward
CNT30713469Daucus carotaMalus domestica golden5089.293.72446forward
CNT30688863Daucus carotaTriticum urartu58.9725.0188.97526forward
CNT30362291Daucus carotaSorghum bicolor27.0260.7186.31241forward
CNT3057361Daucus carotaAmborella trichopoda59.5310.5588.89531forward
CNT30147977Daucus carotaBrachypodium distachyon35.225.6387.9314forward
CNT30585620Daucus carotaEchinochloa crusgalli58.9710.2588.21526forward
CNT30497263Daucus carotaDigitaria exilis33.8642.8485.43302forward
CNT30333024Daucus carotaCynara cardunculus47.984293.46428forward

Expression of CNT30627902

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF*

>peptide 2 (47 aa)
AVPNGIGNKATLPPTATKSPPPQVKLVLVVAPGAVALGAKAWVFCIH*

Sequence

>CNT30627902
GCAGTTCCTAATGGAATAGGTAACAAAGCCACTTTACCACCCACTGCTACTAAATCACCGCCTCCCCAAGTTAAACTGGTGCTTGTTGTTGCACCCGGAG
CCGTTGCACTGGGTGCTAAAGCATGGGTGTTTTGTATCCATTGAGCAAAGACAGGTTGTAATTGTATAGCGGTATCCGAAAACATATCTTGAGGACGCCC
CAAAGCGCTCATGGTATCATTATGAATATACAAACCAAAACTGTGAAAGCCTAGAAATATACATGCCCAGTTGAGATGTGATATGATTGCATCGCGATGC
CTAAGGACACGATCTAATAGATCATTGTATCGAGTAGTAGGATCATAGTCTCTTACCATAAAAATGGCTGCATGCGCAGCAGCGCCAACTATGAGAAATC
CACCAATCCACATGTGATGTGTGAACAATGACAGTTGTGTACCATAGTCAGTAGCTAGATACGGATAAGGCGGCATAGAATACATATGGTGAGCTACAAT
AATGGTTAAAGAGCCTAACATAGCTAGGTATGAGATACGGAACGGAACCTGTCGTAAAAATAAATGAGTAGTTTTCGGGAATGCTCGGGACGAAAGGGAC
CTTTTTTTATGTTTTAAGAAAAATTGTATTTACCGGATAGTTGTAAATTTCAATTTGAATTAGGGATTCCGTGTACAAGGTTCTTAACTGCATATGCATC
TGATCATATATGTATTATCATTATCATTTTAGATTACAATAAAAAAAGGAAGGAGATTTTTCAATGCGAGATCTAAAAACATATCTTTCCGTGGCACCGG
TATTAAGTACTCTATGGTTCGGGTCTTTAGCAGGTCTATTGATAGAGATTAATCGTTTTTTCCCAGATGCGTTGACATTCCCCTTTTTTTGA