Detailed information on CNT30627901


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB7|YCF68_ORYNI, E-value = 9e-28

BLAST vs NONCODE:
NONORUT005034, E-value = 1e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Daucus carotaSetaria viridis41.3725.8490.7484forward
CNT30615873Daucus carotaSesamum indicum15.8142.4392.97185forward
CNT30272810Daucus carotaChenopodium quinoa14.0244.0993.29164forward
CNT30402011Daucus carotaBeta vulgaris14.9629.8188175forward
CNT30712184Daucus carotaGlycine max52.05101.593.27609forward
CNT30637537Daucus carotaCapsicum annuum21.2841.4386.35249forward
CNT30177674Daucus carotaSecale cereale34.1919.785.5400forward
CNT30221081Daucus carotaHordeum vulgare26.4115.2681.88309reverse complement
CNT30556102Daucus carotaOryza glaberrima48.2992.3292.39565forward
CNT30610339Daucus carotaGossypium raimondii23.2581.6889.34272reverse complement
CNT30714122Daucus carotaMalus domestica golden19.454.9694.71227forward
CNT30684661Daucus carotaTriticum urartu74.720.6589.13874forward
CNT30720008Daucus carotaTriticum spelta14.6270.3793.57171reverse complement
CNT30479986Daucus carotaArabidopsis halleri10.5149.295.93123reverse complement
CNT30362263Daucus carotaSorghum bicolor38.7252.3794.26453forward
CNT30595932Daucus carotaOryza meridionalis43.3338.1592.5507forward
CNT30646085Daucus carotaCannabis sativa21.7958.4994.12255reverse complement
CNT3057391Daucus carotaAmborella trichopoda306.9586.04351forward
CNT30318962Daucus carotaAsparagus officinalis98.2155.1194.951149forward
CNT30148380Daucus carotaBrachypodium distachyon47.4440.9387.39555forward
CNT30575742Daucus carotaOryza barthii37.3597.5492.22437forward
CNT30116753Daucus carotaOryza nivara31.0390.5292.29363forward
CNT30726606Daucus carotaLupinus angustifolius100.5199.7592.521176forward

Expression of CNT30627901

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDSREERSHGGPPRTARIPRVNRKLDLHWISPESPHLSS*

>peptide 2 (45 aa)
MSLVLLHRRETKEDFHLQVSLRRSSLLFGCEAVSNQNTQQRLALPE

>peptide 3 (33 aa)
MYGFSRREEPWWSPPDRPDPTSESKVGSTLDLT*

>peptide 4 (39 aa)
MPKARETPSLSFLFSPSYPHTGGHGDVKKGILSTCSDLG*

>peptide 5 (39 aa)
MIHISGSGADEHIELSMWLRALTAQAQRRNYQGRALPLS*

>peptide 6 (55 aa)
SLSVLVPPFFLTMASLCERTPMRRKKKALRDPPGPTLDTLRSFFKPGSHFESRDR*

Sequence

>CNT30627901
TCTCTAAGTGTGCTTGTTCCCCCCTTCTTCCTTACCATGGCAAGTCTTTGTGAAAGAACTCCGATGAGAAGAAAAAAGAAGGCGTTAAGAGACCCTCCTG
GCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGGCTCCCATTTCGAATCAAGAGATAGATAAATAGACACATCCCATTGCACCGATCGGGGGCG
CTCGTAGTGACTGAGGGGGTCGAAGACCAAGAAGTGAGTTATTTATACCAAGCATTCTTCTTACGGCTAGATCCAATCTCCTGGTCCCTGCGGAAAGGAA
AAAGAATTTCACGCTTTTCCTTTCGGTAAGGGAGGATTAGGGAAATCCTATTGATTGCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAAAAAA
CGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGTGATCTCGTAGTTCTTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTATTT
TCCCATTGAGGCCGAACCTAAACCTGTGCTCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCATGGTGGTCC
CCCCCGGACCGCCCGGATCCCACGAGTGAATCGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGGTTT
CAAACCCCGGTTCGAACAGGAGGAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCCGATGAGCACATTGAACTATCCATGT
GGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGAGCCTCCCGCTGGGGGCC
CGCTATGCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCTCATATCCCCACACGGGGGGACATGGGGACGTAAAAAAGGGGATCCTA
TCAACTTGTTCCGACCTGGGATAATAAGCTCATGAGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTCACTCAGACGT
AGCTCCCTTCTTTTTGGGTGTGAAGCAGTATCAAACCAAAATACCCAACAAAGATTAGCTCTCCCTGAAA