CANTATAdb - search

Detailed information on CNT30627899

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 6e-111

BLAST vs NONCODE:
NONMEST005600, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692810	Daucus carota	Oryza sativa	44.6	44.78	90.99	566	forward
CNT30378684	Daucus carota	Arabidopsis thaliana	41.69	52.07	93.95	529	forward
CNT30300480	Daucus carota	Triticum aestivum	44.6	43.21	90.81	566	forward
CNT3089382	Daucus carota	Vigna radiata	33.65	93.64	91.8	427	forward
CNT30540531	Daucus carota	Brassica napus	46.02	30.15	94.01	584	forward
CNT30441777	Daucus carota	Aegilops tauschii	39.09	88.1	89.52	496	forward
CNT3018289	Daucus carota	Zea mays	44.76	21.89	90.67	568	forward
CNT30606924	Daucus carota	Gossypium raimondii	21.2	32.89	93.68	269	forward
CNT3058324	Daucus carota	Amborella trichopoda	44.6	82.03	88.52	566	forward
CNT30147990	Daucus carota	Brachypodium distachyon	44.52	37.32	89.91	565	forward
CNT30117690	Daucus carota	Oryza nivara	16.63	65.73	91.47	211	forward
CNT3049694	Daucus carota	Cucumis sativus	8.83	37.71	94.64	112	forward

Expression of CNT30627899

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSITFVHNFHTKVSAVNDISPSINYTALTINYRLVESHSADT*

>peptide 2 (40 aa)
MSGYDIISFFFLPEPVTFISRFIFCGFPDQTRGIPSEKLP*

Sequence

>CNT30627899
CGCCCCGCCAGTTTTCTTTTATTTATTTGCATTTCAAAGGATTCCTTTTTGATCATTCAAAAATATTTGTTTATCTAAAAAAGTCTTAAATAAATAAAAA
AGGAGCAAGACCGCCTCTTGATAGAACAAGAAAGAGGTTATTGCTCCTTTTTTAATATTTCAAAAACTCGTATAGACTAAGACCCGGCCTTACCCATTTG
TAGATGGAGCTTCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTAGCGCGGTTAATGATATCAGC
CCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAA
GCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTT
CTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGCATACCATCAGAAAAGCTTCCTTGACCG
ATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACT
CACGACCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCA
GATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGA
ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA
TGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATAGCAGTCATGGTAAAAATCTT
GGTTTATTTAATTATCAGGGACTCCCAAGCACACGAATTTTCTATAACTCGAAATATAGAAAACTGAAGGCTTGTTGGAAAACCAGTTGTCGGACTTGAT
TAATCGCTCTTTGTTGTTCAAAATTAATAGTTTCGTTTTTGTAATTTTCTAGTTGTTTCAAAGTCTTAG