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Detailed information on CNT30627894


BLAST search results

BLAST vs Swiss-Prot:
sp|Q85WS3|PSBA_PINKO, E-value = 3e-91

BLAST vs NONCODE:
NONMEST005600, E-value = 2e-180

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3095573Daucus carotaSolanum tuberosum8.7322.0391.0189forward
CNT30219939Daucus carotaHordeum vulgare17.5521.9691.06179forward
CNT3067750Daucus carotaLeersia perrieri25.195.8888.67256forward
CNT30655381Daucus carotaRosa chinensis52.4510094.77535forward
CNT30621618Daucus carotaCajanus cajan18.3339.1289.3187forward
CNT30484609Daucus carotaChara braunii20.252.4280.58206forward

Expression of CNT30627894

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSGYDIISFFFLPEPVTFISRFIFCGFPDQTRGIPSEKLP*

Sequence

>CNT30627894
CGCCCCGCCAGTTTTCTTTTATTTATTTGCATTTCAAAGGATTCCTTTTTGATCATTCAAAAATATTTGTTTATCTAAAAAAGTCTTAAATAAATAAAAA
AGGAGCAAGACCGCCTCTTGATAGAACAAGAAAGAGGTTATTGCTCCTTTTTTAATATTTCAAAAACTCGTATAGACTAAGACCCGGCCTTACCCATTTG
TAGATGGAGCTTCAACAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGC
TACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGCATACCATCAG
AAAAGCTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACG
GAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATCA
ACAGAAGCCGCTTCCCAGATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATC
CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAA
AACACCAAACCATCCAATGTAAAAAAGGGAGTTGCTCCCTCAGCAAAACTGGGATAAAGTTGAGCCAAAAGATCCCGATTCAAGATAAATTCATGAGGAA
GTGGTATCTCTTTAGGATCTACTCCAGCGTTTAGAAATTGGTTAATCGGTAAAGATACATGTACTTGATGCCCCGCCCAAGAGAGAGACCCCAGTCCTAG
TAGCCCCGCTAAATGGTGAT