Detailed information on CNT30627892


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT001953, E-value = 5e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281672Daucus carotaChenopodium quinoa37.696.6292.58229reverse complement
CNT30195004Daucus carotaPisum sativum30.5464.3688.17186forward
CNT30223508Daucus carotaHordeum vulgare43.8444.6589.51267reverse complement
CNT30553994Daucus carotaOryza glaberrima102.1387.4888.75622forward
CNT30153321Daucus carotaPrunus persica51.0764.1294.21311reverse complement
CNT3025558Daucus carotaPopulus trichocarpa95.471.7395.35581forward
CNT30150988Daucus carotaBrachypodium distachyon10034.8888.34609forward
CNT30577653Daucus carotaOryza barthii62.7363.0494.5382reverse complement

Expression of CNT30627892

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRTNYVASTPRIQVLYTSLVRSFVGTTRNNELAKWICLS*

>peptide 2 (37 aa)
LSDQKRKKNSSSFFFDYLPSRMYKTESIRFLKKITNP*

Sequence

>CNT30627892
CCTAAGTGATCAAAAAAGAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCCTCGCGTATGTATAAGACCGAATCCATTCGATTTCTAAAAAAG
ATTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTTGTTTTTCAATCTTTTCGGTCTTGGTTCCGTAGGAGCAAATCAGAAA
GATTGAGAAATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTATACTCG
TAGTCTCTGAAGGATGAGAACCAACTATGTAGCATCTACACCGAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAAT
AACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCGTCGTTCCTGACCCTGCTTCGCCTTAATTGTTATTTGAACAAGTCAAAGTTCTGTCTTG
GTCCGAGTGTGGATAGCATTTCTCTTCTGCATGTCCATGGAGTTTTGAAAAATCCAAACATCTCAGAGATAGATAGAGAGGTAGGAATTTATCGAACGAA
CCGCACTCC