Detailed information on CNT30627396


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501325Daucus carotaCoffea canephora101.918.592.06428forward
CNT30618776Daucus carotaSesamum indicum101.920.7389.95428forward
CNT30255597Daucus carotaAvena sativa49.5223.8390.87208reverse complement
CNT30231730Daucus carotaAnanas comosus33.15093.53139forward
CNT30679583Daucus carotaTriticum urartu56.675.1191.18238forward
CNT3035046Daucus carotaCucumis melo52.388.590.91220reverse complement
CNT30577701Daucus carotaOryza barthii34.5219.793.1145forward

Expression of CNT30627396

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CSSVLVGELSYVASRLRSHKRALPLCIQPLH*

>peptide 2 (32 aa)
LFRARRRTLLCCIPTKVSQTCASLMHPAASLM*

Sequence

>CNT30627396
TGCTCTTCCGTGCTCGTAGGCGAACTCTCCTATGTTGCATCCCGACTAAGGTCTCACAAACGTGCGCTTCCCTTATGCATCCAGCCGCTTCACTAATGTG
AATAGGTTATACAGAAGGGTGGGTTGGTTATATACTCTTATGCGCGTTCCTTTTTCGAACCTTTTGGTATGTATTGCCCCCTAACTATGGATCAGATCCA
CCAGACGATAAACTAAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCAATGGATTCGTGGAATTTCTGTGGATTGCGTTGGGGGAAATCTACCA
AAGCTAGGCAGATAGATAGACTCCTTTCCCGCTGCTAAGGGAGAGCAAGAAAAAAACGATTGTTTTTGAACCAGCGCCCCCTTTTGGGTATGCAGGTACT
AAGAGCCCTCTCACTACAAT