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Detailed information on CNT30627167


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Daucus carotaSetaria viridis40.5325.2793.93445forward
CNT30259423Daucus carotaBrassica rapa29.8722.495.43328forward
CNT30687569Daucus carotaTriticum urartu40.5321.8893.71445forward
CNT30578173Daucus carotaOryza barthii40.4413.0893.47444forward

Expression of CNT30627167

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLLGNSARVLPPSWLTIFESLEYFGIIFRAEDLCLWAGVNIADQRIWWSTIVRTW*

>peptide 2 (62 aa)
MLIAGFNSRGRHHIKKICYHYLTEKLTRRLDCSQADDCCCSSSLVSAICTKLPGTESIPTRTS

>peptide 3 (87 aa)
MPADQFTMSPSLTFVKQATWIGQGLLRLMRPRSRSLRSIFLIGASICMGNSLLIDLAQCPPPSPAAFRLAGVYNDNFRTLMPDRETI*

Sequence

>CNT30627167
GTTCGCATCGCAACTAATAGAAAAAACAACTACTAGACTAGACTAGTAGTTGAGTGCTCCTTGTTGTTCGTATCTTGACCGGATCCGAGCTTCCCAAGCT
CTATGCTGTTGGGGAACTCTGCAAGGGTCTTACCACCTTCTTGGTTGACTATATTTGAGTCTTTGGAGTACTTTGGGATTATATTCCGCGCCGAGGATTT
GTGCTTGTGGGCCGGGGTGAATATTGCAGACCAGCGGATCTGGTGGTCGACAATCGTTCGGACTTGGTAAAGGTTGTCGCGGCACCTGTAGTAGGACAGA
GGACTTATCGCGATGCCCGCGGACCAATTTACGATGTCTCCGTCGCTGACGTTCGTCAAGCAGGCCACGTGGATTGGCCAGGGTCTTCTTCGGCTAATGA
GACCCCGATCCCGAAGCCTTCGGAGTATCTTTTTGATAGGCGCCTCTATTTGTATGGGGAATTCGCTGCTGATAGATCTCGCCCAGTGTCCCCCCCCTTC
CCCCGCCGCCTTCCGACTCGCGGGAGTATACAATGACAACTTCCGAACACTCATGCCCGATCGTGAGACTATATGAAACGAAAACATTCGTTCAAGTTAT
AGCTTATCGGTAGGGAAATGGCATTGCTAGCTTTTCCATATATATGAAACGAAAACATTCTTGTTTTTCAAGCTTATCCCTAGGGTAAACCCATTGGTAG
GTTTTACTGCTATAGAGCTCTAACAGCTTTCCTTCTTGCTTAGCGCATATATCGTTCGTATCCTAACTAGCTTTATTGCGAGACTATAGCATCTTGAACT
AATAATGCATCTAAAGCAGAAACTGCTAATAAAGAATACAAGTCTGTAGGACTGCTCCCTATCGATCGTAAAATCGTAGTTCCCAGAACGGGTCAACTCT
TCAGAGTCATGCTGATAGCAGGGTTCAACTCCCGGGGAAGACACCATATAAAAAAGATCTGTTACCACTACTTGACTGAGAAACTTACCCGAAGGTTGGA
CTGCTCTCAGGCGGATGATTGCTGCTGTTCTTCTTCTCTTGTTAGTGCTATCTGCACTAAACTCCCGGGGACGGAGAGCATTCCCACACGAACGAGTT