Detailed information on CNT30626879


BLAST search results

BLAST vs Swiss-Prot:
sp|O49845|SUS2_DAUCA, E-value = 6e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500405Daucus carotaCoffea canephora63.9171.7782.02356forward
CNT3019859Daucus carotaCitrullus lanatus20.2914.8584.07113forward
CNT30197818Daucus carotaPisum sativum41.2947.2383.04230forward
CNT3061548Daucus carotaArabidopsis lyrata50.2734.1979.29280forward
CNT30610552Daucus carotaGossypium raimondii62.8454.5278.29350forward
CNT30713351Daucus carotaMalus domestica golden47.7660.1878.57266forward
CNT30621781Daucus carotaCajanus cajan42.9181.5780.75239forward
CNT3023679Daucus carotaPopulus trichocarpa38.7838.3782.87216forward
CNT30333478Daucus carotaCynara cardunculus38.2441.3683.1213forward

Expression of CNT30626879

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQVAQKHPWYQLCNDKVHHSSHGSSEQISI*

>peptide 2 (73 aa)
MNNDLSWTTVDCCKCWQTAGHCFNNSQTKSLIECRLHKSTLGISYATIKFTIPHTVLLSRYPSKLTIQLVGVN*

>peptide 3 (29 aa)
MISAGPPWIVANVGKPQVIASITVKPKAS*

Sequence

>CNT30626879
GCTTACTTCTCCTGGATGCGTTTCAGGCCTCCAGCTGAAATAGTCTCCCAGTGAGAAGGTTCAGTCTTGCACCTCTCAAAGAAATTAACAAGGAGCTCAG
CCGCTTCCTCACCATGATAAGGATCAATATGGAAACCTGAGGTCCCATGAACAATGATCTCAGCTGGACCACCGTGGATTGTTGCAAATGTTGGCAAACC
GCAGGTCATTGCTTCAATAACAGTCAAACCAAAAGCCTCATAGAATGCAGGTTGCACAAAAGCACCCTTGGTATCAGCTATGCAACGATAAAGTTCACCA
TTCCTCACACGGTTCTTCTGAGCAGATATCCATCTAAATTGACCATTCAGCTTGTAGGTGTCAATTAGTCCATACATTTTCTTCATCTGGGCTTGTTCCT
CCAAATCCTTTGATTCCTTCCTTCGGTCTCCACCAACAACTACTAGGTTGACCAACTCACGTAGCTTGGGATTCTTAGCATACCACTCAACAAATCCTGT
TAAGTTCTTCACATTGTCCAGCCTTGCCATGGTGAACAGTATAGGCTTATTCCTGTC