Detailed information on CNT30626868


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0G9W0|RR4_DAUCA, E-value = 7e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197932Daucus carotaPisum sativum87.7419.7986.92451forward
CNT30185413Daucus carotaSecale cereale48.8313.1189.24251forward
CNT30292655Daucus carotaTriticum aestivum48.8312.4189.64251forward
CNT30237795Daucus carotaBrassica oleracea87.1611.6888.39448forward
CNT30556045Daucus carotaOryza glaberrima46.697.3589.17240forward
CNT30358521Daucus carotaLactuca sativa25.294.3986.92130forward
CNT30116859Daucus carotaOryza nivara48.8360.1988.84251forward

Expression of CNT30626868

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GMENTERKRVDKEGKSTSHCRFRSGANNILRLAIHLFSNRPIYYLLFD*

Sequence

>CNT30626868
GTGGCATGGAAAATACTGAAAGGAAAAGAGTAGACAAGGAAGGAAAATCTACCTCTCATTGTAGGTTTAGGTCTGGCGCGAATAATATTCTACGACTAGC
AATTCATTTATTTTCAAACCGACCCATTTACTATCTATTATTTGATTGACTAATCCTTTATATTGGAATGGTTGAAGAGTCAAATGTTTTGGCATTTCGT
CCTGAGAGGGTGAATTGAAAGAATTTTGAATCAGAGCTCTAGAGTTTTGTTCATCCCTCGCCGTAATAATATCTCGGGGTTTGCAGCGATAACTTGGTAT
ATCTACTATACGACCATTGACTAAAATATGTCTATGGTTAACTAATTGACGGGCTCCAGGAATAGTCGTAGCCATACCCAATCGAAAAAGGATGTTATCC
AAGCGCATTTCAAGTAATTGGAGTAAAACCTGACCTGTTGACCCCTTGGCTTTACCGGCGATACGAACGTATTTAAGTAATTGTCGTTCTGTAAGACCAT
AATGAAAACGCAAC