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Detailed information on CNT30626852


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 5e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546900Daucus carotaIpomoea triloba18.5930.4380.75161forward
CNT30515299Daucus carotaJuglans regia21.5937.5583.96187forward
CNT3090378Daucus carotaSolanum tuberosum17.939.2480.65155forward
CNT3078186Daucus carotaBrassica juncea16.8626.9482.88146forward
CNT30650912Daucus carotaRosa chinensis18.0121.4983.33156forward
CNT30704079Daucus carotaPrunus avium17.5554.8783.55152forward
CNT30723266Daucus carotaLupinus angustifolius18.0123.3583.33156forward

Expression of CNT30626852

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHRDHPLPSNQPSRSPSDSPPAPVPRSSSSL*

>peptide 2 (31 aa)
MSNSTRDTTESTRGELWVHQHSVSWQVGQGS*

Sequence

>CNT30626852
TATTAGAATAATTTGTTTCAGTTTAACTATAATTTTACATCACTCGGAAATGAAAGACGCAAATACATAGCACGCAAATTTATTTTTAGTACATGAAATG
TCATCTGCTAGCTAGTACTTTTATTACAGAAGTATGATATTAGTAACACCAAGCACATAAACACATTACTTAAAACATAACACACATATTAATACTCAAA
ACAAAGTTTATTTTATTGTTAATGCTGCTAGTAGCTCATAATTTGCATGCTGCTGATGCTGATGGGCCATGTTGAGTTGATTAATTAAGCTGCAAGTAAT
GCATCGAGATCATCCATTGCCCAGTAATCAACCGAGTCGAAGCCCATCTGACTCACCTCCTGCTCCAGTCCCAAGAAGCTCTTCAAGCTTGTGATGTGCT
CTTTGAATTCAAGCTCTTCCTCTGGAGTGGCCATTTGAGCTGGGCTGAAGTTTGGTGGCTGAAATGTTCCAAAGCATTGGGCTGGGTCATAACCCAACTC
GGACTGAGTCGACCCGGCTGGAGAGAGTGCATTGAAGTAGGACTGAGTCGACTCGGTGGATGAGTAACTCAACTCGGGATACGACTGAGTCAACTCGGGG
GGAGCTCTGGGTGCACCAGCACAGTGTTTCTTGGCAGGTGGGTCAGGGAAGTTGAGCTTGGCCTTGTCACCACGGATGCGCTTGGCGGCCTCGTCATAAG
CCCTGGCGGCCTCTTCAGGGGTGTTGTAAGTACCGAGCCAGACTCGGACGCCTTTCTTGGGGTCACGTATCTCGGAAGCCCATTTGCCCCACGGCCTCTG
ACGGATGCCGCGGTACGCATTCTTCCGAGTCCTCTTGTGCCCTTCTTGACTCGGTTTCCCACTCGC