« Back to Daucus carota search


Detailed information on CNT30626675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000586, E-value = 2e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089926Daucus carotaSolanum tuberosum27.078.4198.39186forward
CNT30600960Daucus carotaFraxinus excelsior25.6219.4983.52176reverse complement
CNT3099709Daucus carotaOryza rufipogon34.6410.9399.58238reverse complement
CNT3019347Daucus carotaCyanidioschyzon merolae21.115.386.21145forward

Expression of CNT30626675

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MADFRLCSTSRSHSQAVVTPFVQVATYATRNFATLGQLELLPPFTGASIQSL*

>peptide 2 (44 aa)
SSENLYREGFPAAQQFFHTNLAARRCYWHNNRYTIGWPNPVLSY*

Sequence

>CNT30626675
CCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTA
CACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGA
CGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCA
AACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGA
TCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTT
CGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTG
TCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA