Detailed information on CNT30626568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3086406Daucus carotaVigna radiata25.783.1486.4974reverse complement
CNT3028910Daucus carotaTheobroma cacao33.4519.283.3396reverse complement

Expression of CNT30626568

Peptides detected in this lncRNA

>peptide 1 (50 aa)
QNLKVPIPNVSHCNETKLHVSPPPSTSILLLLLPSHSQTCIPNHTKPPLL*

>peptide 2 (42 aa)
MKLNSTCHRLPQLPSSFYYFPLILKPAFQITQNHHYYKSSPP*

>peptide 3 (31 aa)
MGYSRLRRRRRSRDGAPPHHPRPRRPPQRPRR

>peptide 4 (35 aa)
MALEWVILGYAAAAEAVMVLLLTIPGLDGLRKGLVA

Sequence

>CNT30626568
CAAAACTTGAAAGTCCCAATACCAAACGTGTCACACTGTAATGAAACTAAACTCCACGTGTCACCGCCTCCCTCAACTTCCATCCTCCTTTTATTACTTC
CCTCTCATTCTCAAACCTGCATTCCAAATCACACAAAACCACCATTATTATAAATCATCTCCACCTTGAGAACCTGATAATGGCACTAGAATGGGTTATT
CTCGGCTACGCCGCCGCCGCAGAAGCCGTGATGGTGCTCCTCCTCACCATCCCCGGCCTCGACGGCCTCCGCAAAGGCCTCGTCGCC