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Detailed information on CNT30626489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST005034, E-value = 2e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617713Daucus carotaSesamum indicum23.7210.6193.75208forward
CNT3021394Daucus carotaCitrullus lanatus23.7233.1796.63208forward
CNT30200674Daucus carotaPisum sativum24.0622.3392.89211forward
CNT30505351Daucus carotaNicotiana attenuata23.725.9896.15208forward
CNT30291829Daucus carotaTriticum aestivum23.725.2889.9208forward
CNT30541450Daucus carotaBrassica napus24.297.5894.84213forward
CNT30511101Daucus carotaSolanum lycopersicum23.8317.1293.3209forward
CNT30172770Daucus carotaTrifolium pratense12.4321.3793.58109forward
CNT3017990Daucus carotaZea mays23.726.2991.35208forward
CNT30232563Daucus carotaAnanas comosus25.436.5192.83223forward
CNT3057337Daucus carotaAmborella trichopoda20.184.7592.09177forward
CNT30726491Daucus carotaLupinus angustifolius23.8317.9493.78209forward

Expression of CNT30626489

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MPKVEEVSPSNKHKHVGWFFNSPESSGQQ

>peptide 2 (40 aa)
MPRRLPIFCANSNKPPSPIRITLFLFLNSLLYCLLLLLCI*

>peptide 3 (53 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKSRKLSDKGFVKAGLNIYLYPSLAATQ*

Sequence

>CNT30626489
ATTCCGATAATGAGTTCATAATGTCAGATATCATTCTTAAGGATCATGCCTCGTCGTTTACCAATATTTTGTGCCAATTCTAATAAACCTCCCTCTCCGA
TCCGAATCACCCTTTTTTTATTTTTAAATTCTCTACTCTACTGTCTTTTGCTATTACTCTGTATATAGTGAGTTATATATTTAGATTTCCTAATTAGATT
AAAATTTTTTGAGACGCGCATATGTTGCCTTGGGATAAACTCAAAAATAATATTTCAAAAAATAGTCAATGATGACCCTCCATGGATTCCCCTATATAAG
CCGCGGCTAAAGTTGCAAAAATCAGAGCTTGAATACCACTTGTAAATAATCCAAGGAACATGACAGGTATAGGAACCACTAAAGGTACTAAAGAAACAAG
AACAACAACTACTAATTCATCAGCTAATATATTTCCGAAAAGTCGAAAACTGAGTGATAAAGGTTTTGTGAAAGCAGGACTCAATATTTACCTCTACCCA
AGTTTAGCAGCAACTCAGTAGTATATCACACTAGCATTTTTGATATATAAATGAATATTTTCCCCGATCTCAACATATATAAATTAATGAATAGTATTTT
CCTAAACTTGACAACTGGATAAATTTCTCTGGTCCTGAGAATATTTGATTTAACAAGGTTAAGCGTGAAATTGTGTTACAAACAAGGTACTAGAGACTAG
AGAGTACTAACCTGGGCACGCGGAAAGATCAGGAAGTTGAAGACCACAGGTCTTTGGCAGATCAATTGCCCTGCTGAGATCAATTTGAATGCCGAAAGTG
GAAGAAGTATCACCAAGCAACAAGCACAAACATGTTGGTTGGTTTTTCAACAGCCCGGAAAGCTCTGGACAGCAAGC