Detailed information on CNT30626343


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 3e-63

BLAST vs NONCODE:
NONMTRT000175, E-value = 2e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198744Daucus carotaPisum sativum73.4682.1492.31299forward
CNT3089384Daucus carotaVigna radiata74.237.1992.38302forward
CNT30555706Daucus carotaOryza glaberrima74.4544.2392.41303forward
CNT30145403Daucus carotaMedicago truncatula63.3995.9194.57258forward
CNT30360185Daucus carotaLactuca sativa93.6153.1497.38381forward
CNT3058320Daucus carotaAmborella trichopoda74.9443.8890.49305forward

Expression of CNT30626343

Peptides detected in this lncRNA

>peptide 1 (35 aa)
HLHTKVSAVNDISPSINYTALTINYRLVESHSADT*

>peptide 2 (42 aa)
MSGYDIISFFFLPEPVTFISRFIFCGFPDQTRGYQRTMHSTK*

Sequence

>CNT30626343
TGCACCTCCATACCAAGGTTAGCGCGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAAGCCATAGTGC
TGATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAA
TCGGACCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT
GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGTGGGGGGAAATCG
AGCAGAA