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Detailed information on CNT30625542


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311670Daucus carotaCamelina sativa34.4659.1779.14326forward

Expression of CNT30625542

Peptides detected in this lncRNA

>peptide 1 (38 aa)
CNWGMSDCTGWMVIVLDCSGNMPGRGCTLQMKGCSLEM*

>peptide 2 (63 aa)
MLVSWGYNQVKQGYTQERRGCTQERQGCTQERRGCTQVKRGYNLEKMQEKIPCHQHREKIVHQ*

>peptide 3 (67 aa)
MMEKLDCMKVRLGCMMGRLDCRMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCRQVRWGCSWGR*

>peptide 4 (37 aa)
MIWGARDWRPGWSHAKVQTVHVTRKLNVNSLFQHLLI*

Sequence

>CNT30625542
CTGTAACTGGGGGATGTCGGACTGTACGGGCTGGATGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATGAAGGGT
TGTAGCTTGGAGATGTAGGACTATAGCTTGGAGATGTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGGAGAAGT
TGGACTGTATGAAGGTGAGGTTGGGCTGTATGATGGGGAGGTTGGACTGTAGGATGGGGAGGTTGGGCTGTAGGACGGGGAGCTCGGGCTGTAGGACGGA
GAGGTCGGGCTGTAGGATGGAGAGGTGGGGCTGTAGGACGGAGAGGTGGGGCTGTAGGCAGGTGAGGTGGGGCTGTAGCTGGGGGAGGTAGGGGAGTAGG
ATGGACTTGTCGGTGAATATGTAGGGCTACTAGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCTGGGGCTATAACCAGGTGAAGCAGGGCT
ATACCCAGGAGAGGCGGGGCTGTACCCAGGAGAGGCAGGGCTGTACCCAGGAGAGGAGGGGCTGTACCCAGGTGAAGAGGGGCTATAACTTGGAGAAGAT
GCAGGAGAAAATCCCATGCCACCAACATAGGGAGAAAATTGTGCATCAGTAATGGGTGACAGCCGAAGGTTTGGGCTTAGCATGTAGTTTGGTGACATCA
TTCCATCATGATATGGGGTGCCCGAGATTGGCGACCGGGCTGGAGTCATGCCAAAGTCCAGACCGTCCATGTAACTAGGAAGCTGAATGTCAATAGCTTG
TTTCAACATCTTCTCATTTAAATACAAAGAACAGTCTCCAGTGCCAATTGGTGCCAGTTGACCCAACATGATATTTTCAGTAACACCTCTCAGGTAATCT
GTTTCTGCATAAACTGCAGCATCAAGGAGAATGTCAACTGTTTCCT