Detailed information on CNT30625473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701953Daucus carotaQuercus lobata23.427.989.6177forward
CNT30282455Daucus carotaChenopodium quinoa37.998.9384125forward
CNT3071730Daucus carotaQuercus suber29.7924.1485.7198forward
CNT3047606Daucus carotaPrunus dulcis24.629.3286.4281forward
CNT3093690Daucus carotaSolanum tuberosum33.742.7885.59111forward
CNT30566785Daucus carotaActinidia chinensis33.7441.7386.49111forward
CNT30606370Daucus carotaGossypium raimondii35.8756.4690.68118forward
CNT30175658Daucus carotaVigna angularis31.9142.5182.86105forward

Expression of CNT30625473

Peptides detected in this lncRNA

>peptide 1 (41 aa)
IRSVTDEFTKKDLLVAVKSVDNQAQKLINLGLKSKCLSVRH*

Sequence

>CNT30625473
CATCAGAAGCGTTACTGATGAGTTCACGAAGAAAGATCTCCTTGTTGCTGTAAAAAGTGTTGATAATCAAGCTCAGAAGCTGATTAATCTCGGCTTGAAA
AGCAAATGTCTCAGTGTCCGCCATTAGAGAAAGAGAGACGAATACAAGTTGATTGAAGATCTAGGGTTTGAGATTACAACAAGAAAGAAAGTGACTTGGT
TGAATCAGGAGGCGGAGAGGAGAAGCGGAGACTATATAACAGGATTAGGGTTTCTAGATCCTTCTATTGCTATATCCTTTTTCTCCTGTCAAACCTTGCA
GACTAATTTGTTAAAGTTATTGTCACCGG