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Detailed information on CNT30625469


BLAST search results

BLAST vs Swiss-Prot:
sp|P51818|HS903_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002404, E-value = 1e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282434Daucus carotaChenopodium quinoa26.5416.1782.87397forward
CNT3019970Daucus carotaCitrullus lanatus15.9878.6283.68239forward
CNT30381504Daucus carotaManihot esculenta36.7664.1882.18550forward
CNT30402735Daucus carotaBeta vulgaris38.0341.7880.84569forward
CNT30526134Daucus carotaPhaseolus vulgaris26.4762.1783.08396forward
CNT30630919Daucus carotaVigna unguiculata71.5280.3382.061070forward
CNT30711421Daucus carotaGlycine max12.5765.5182.98188forward
CNT30158908Daucus carotaPistacia vera45.0541.2580.56674forward
CNT30635894Daucus carotaCapsicum annuum13.7736.5983.98206forward
CNT30187559Daucus carotaSecale cereale14.9733.5883.93224forward
CNT30394033Daucus carotaTriticum turgidum41.8446.2781.47626forward
CNT30441217Daucus carotaAegilops tauschii27.8155.9981.25416forward
CNT30250601Daucus carotaAvena sativa10.0935.5381.46151forward
CNT30665102Daucus carotaTriticum dicoccoides9.1633.0981.02137forward
CNT304322Daucus carotaZea mays17.2545.1883.33258forward
CNT30227528Daucus carotaAnanas comosus14.6430.1284.47219forward
CNT30652736Daucus carotaRosa chinensis30.0877.7282.89450forward
CNT30352420Daucus carotaEragrostis tef30.5573.8379.21457forward
CNT30362691Daucus carotaSorghum bicolor23.7335.8985.35355forward
CNT30704690Daucus carotaPrunus avium74.7355.0284.081118forward
CNT30107297Daucus carotaOryza longistaminata7.5525.1783.19113forward
CNT30323609Daucus carotaAsparagus officinalis72.9365.5381.581091forward
CNT30149846Daucus carotaBrachypodium distachyon9.3631.687.14140forward
CNT30103353Daucus carotaOryza rufipogon40.5760.4683.36607forward
CNT30577638Daucus carotaOryza barthii19.7245.5283.05295forward
CNT30584451Daucus carotaEchinochloa crusgalli10.930.4183.44163forward
CNT30724273Daucus carotaLupinus angustifolius16.3842.5381.22245forward

Expression of CNT30625469

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MSSASTTSSSSSMLKPSFNILWILLPKVLGSSRLNPEVRRAVSKSKRTKSLTDLSFLSASALFLSSSIIAFSGLISIVFLLDI*

>peptide 2 (30 aa)
ALNKRDYIWPWPNALDISIKQNNLGNLGTE*

>peptide 3 (92 aa)
MLESLKAWAFMILSMLAVQPYSPVTKQQGESTTRSETITFSTLSPKTSLTTLQSPSNFSFSSSFFFFSSSLSSSLSPSLVAETNFLPSNSFN*

>peptide 4 (88 aa)
MTLRILFCCSISLEMLRGRSSESTIPLTKLRYSGIKSSQLSMMKTRRTYSLMLFCFFFVSKRSKGALLGTNRTALNSSWPSTEKCFTFK

>peptide 5 (29 aa)
SFEQKRLYMALAKRIRYFHKTKQFRQSWN*

Sequence

>CNT30625469
GAGCTTTGAACAAAAGAGATTATATATGGCCCTGGCCAAACGCATTAGATATTTCCATAAAACAAAACAATTTAGGCAATCTTGGAACTGAATAGCCAGA
GCATAAGGACTTAAAGAACCAACTATCACAAGTCTCGGGATTCCAAAAATATCATGTTCTTCCCAACATTCTAAATTCCTCCGAGTCTCAAAAACAACCT
AAAACTTAGAAGGCTATAATATTAAAAAAGAAAGTAGAAGCGATACTGGATTAGCATGCACTAGAAGAGAACATTTAATCCACTTCTTCCATCTTGCTGC
CCTCTGCGTCAGCATCAGCTTCTTCCAGTGAAGGCATGTCTTCAGCCTCGACCACTTCATCATCATCATCAATGCTCAAACCAAGCTTCAACATTCTGTG
GATCCTGTTGCCAAAGGTGTTGGGCTCCTCAAGGCTGAATCCAGAGGTAAGGAGAGCTGTCTCAAAGAGCAAGAGAACCAAGTCTTTAACAGACTTGTCG
TTCTTGTCAGCATCAGCCCTCTTTCTGAGCTCCTCCATTATAGCATTCTCAGGGTTAATTTCCATTGTCTTTTTGCTTGACATATAACCACCCATGCTTG
AATCCCTCAAAGCCTGGGCCTTCATGATCCTCTCCATGTTAGCAGTCCAGCCATACTCACCAGTAACTAAGCAACAAGGTGAATCCACTACACGATCAGA
AACGATAACCTTCTCAACTCTGTCCCCCAAAACATCTTTAACAACCTTGCAGAGTCCCTCAAACTTCTCCTTCAGTTCCTCCTTTTTCTTTTTCTCATCT
TCACTCTCCTCGAGTTTAAGCCCCTCTTTGGTAGCAGAAACTAACTTCTTACCCTCAAATTCCTTCAACTGACCCACAGCGTACTCATCAATAGCATCAA
CCATGTACAGCACTTCATAACCTTTCTTCTTCAACCTCTCAAGGAAAGGAGAGTTCTCAACAGCCTTCTTGCTCTCCCCAGTAATGTAATAGATCTCACT
CTGGTTCTCTTTCATCCTGGTGACATAGTCCTTCAGGCTGGTCATTTCCTCCCCACTCTTAGTAGAGTGGTATCTGAGCAACTCAGCAATCTTTGTTTTG
TTCTGAGAATCTTCATGAATACCAAGCTTCAGGTTCTTTGAAAAAGCTTCATAAAATTTGTTGTAATCCTCCTTGTTCTCTGCAATCTCAAAGAAGAGTT
CAAGGCACTTCTTCACCAAGTTCTTTCGGATGACCTTAAGAATTTTGTTCTGCTGCAGCATCTCCCTAGAAATGTTAAGGGGGAGATCCTCGGAATCAAC
AATACCCTTAACGAAGCTCAGGTATTCTGGGATCAAATCCTCACAGTTGTCCATGATGAAAACACGACGGACATACAGCTTAATGTTGTTCTGCTTCTTC
TTCGTGTCAAAGAGATCAAAGGGTGCCCTCTTAGGAACAAATAGAACAGCTTTAAATTCAAGCTGGCCTTCAACAGAGAAGTGCTTTACGTTCAAG