Detailed information on CNT30625209


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 4e-107

BLAST vs NONCODE:
NONSLYT002404, E-value = 5e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Daucus carotaSetaria viridis3234.2386.11216forward
CNT30378101Daucus carotaArabidopsis thaliana39.730.3988.43268forward
CNT30636154Daucus carotaCapsicum annuum33.7849.3585.09228forward
CNT3094874Daucus carotaSolanum tuberosum45.3337.4183.01306forward
CNT30510227Daucus carotaSolanum lycopersicum51.5629.7283.05348forward
CNT30145670Daucus carotaMedicago truncatula18.0729.9889.34122forward
CNT30314068Daucus carotaCamelina sativa55.1124.5487.9372forward
CNT3082269Daucus carotaBrassica juncea69.7872.6985.35471forward
CNT30212676Daucus carotaHelianthus annuus24.8947.3284.52168forward
CNT3055928Daucus carotaAmborella trichopoda29.9323.0183.17202forward

Expression of CNT30625209

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLLLVNQRPLMRDLLNLLLFLFLLLLLFINLLYLSFLVLLLFFILVI*

>peptide 2 (94 aa)
MTLRILFCCNISLEMLSGRSSESTIPLTKPKYSGIRSSQLSMMKTRRTYSLMLLGFFLVSKRSKGALLGTNRTALNSSCPSTEKCFCLLTNDHS*

>peptide 3 (35 aa)
LALLHSCYIVLQAGHLLATLCGMVPEQFCNFGLVL*

Sequence

>CNT30625209
CTGGCTCTCCTTCATTCTTGTTACATAGTCCTTCAAGCTGGTCATCTCCTCGCCACTCTTTGTGGAATGGTACCTGAGCAATTCTGCAATTTTGGTCTTG
TTCTGTGAATCTTCATGGATACCGAGCTTCAGATTCTTTGAGAAAGCTTCATAAAATTTGTTGTAGTCTTCCTTGTTCTCAGCAATCTCAAAGAAGAGCT
CAAGGCATTTTTTCACCAAGTTCTTGCGGATGACCTTGAGGATTTTGTTTTGCTGCAACATTTCCCTAGAGATGTTAAGTGGAAGATCCTCGGAGTCAAC
AATACCCTTGACAAAGCCCAAGTACTCAGGGATCAGGTCCTCGCAGTTGTCCATGATGAAGACACGGCGGACATATAGCTTGATGTTGTTGGGCTTCTTC
TTGGTGTCAAAGAGATCGAAGGGTGCCCTCTTGGGAACAAACAGAACAGCCTTGAATTCCAGCTGTCCTTCAACTGAGAAATGCTTCTGCTTGTTAACCA
ACGACCACTCATGAGAGACCTCCTTAATCTTCTTCTTTTTCTTTTCCTCCTTCTCCTTCTCTTCATCAATCTCCTCTACCTTTCCTTCCTCGTCCTTCTT
CTCTTCTTCATCCTCGTCATCTGAGATTTCTTTTTCTGTGGTCTTTTCAATCCACAGAGAGATAGGGTAGCTGAT