« Back to Daucus carota search


Detailed information on CNT30625184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098138Daucus carotaSolanum tuberosum14.2420.4692.18179reverse complement

Expression of CNT30625184

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNKENKKNANRLFGSDFCWLRWGARIVCYVSSKRISCVGIEKVPRSS*

>peptide 2 (42 aa)
MCQTLDTRTWIWTLMTLSLGQKTCKIFKMLPSPTLHVFISDT*

Sequence

>CNT30625184
CCCCATCCATGATCTATTCCATGGTGTCTAACCAACCCTTTTTTTCCAAATAAAATTATGTATGCCTTTCTGATATCCCATAGACACTAACAACATTCAT
TGCAGTGGCCTCAGAATTTGAGCTAAAAATAATTTACGAAGCAGAAATTTTGTTTAATTCTTTGTGGGTGGTCGGCATATATCATATATAGTATAGGGGG
AGAAGAGGTGAACAAATTCTAGACCTCTTCTAAAGGCAAACCCTGGATTCTTGATTTTTATATTTCTGATACTGATCACATGTAAAATTTTCCTACTATG
GGTGCAAAACAGTCCAAGTGAGCCAGTAATCATGAGACTAACGGAATAATCAACATTTTACACCATAAGAAAACTTGGCTTCACTGTAAATGTGTATCAT
ACATAGTAATCATTAGTCTTTCAAAAATATTTACCTCTACGAGTCTTTTACAGCTCTGCTAATCGGACTATACGTTTGCCTCGAGTGCATGTGCCAGACA
CTCGACACTCGGACATGGATATGGACACTTATGACTCTTTCATTAGGCCAAAAAACATGTAAAATTTTCAAGATGTTGCCGAGTCCGACGCTTCATGTAT
TCATATCGGACACTTAAGCAGAGTCCAAGTAACAAAGTCTGACAGTCCAATGAAATTCACATTTACTAAAGAGACTTTTGTCCCAGGTAATGTTTATTGA
AGGATTTCATATAGAATATTGCATCTGATACTGTTGCATCAATAGTTTAAGACTAAAGTAGAACACCTTAAACCCATGTAAAGAGCAGCTAACTTCAGTT
AGCCGTATTTATAATATTTATAAGAAAACTAAGAATTATGCAAAATGCACACGGAAGAGACATATATTCAAGCTAGTGAACAATAAAAACTAAACAATCA
GCTGTACTATATATTATATGTGTATAATTAGGTAAACATACAATTTAAATGAACAAGGAAAACAAAAAAAATGCAAATAGGTTATTCGGATCGGATTTCT
GTTGGCTTCGTTGGGGGGCTCGCATAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAAAAGGTTCCGCGGAGTTCATAATTGCATAA
AAGGAGTCAAAGTAGTGGCTGCGGCGCGTTGAGGCACCTCTTCGACGGTCCTCGTACGCCCGGCCTGACGGCCCGCTCTGCAGAATTCATGGATCGGTGG
CGAGACAGAATAGGCGGGCACTACTAACCAAGCCAAGCCCAGTTCTCGCCGAGAGGC