Detailed information on CNT30624929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Daucus carotaOryza sativa36.1310.5881.6125forward
CNT30405511Daucus carotaBeta vulgaris28.325.6582.6598forward
CNT30526368Daucus carotaPhaseolus vulgaris21.684.7186.6775forward
CNT30708847Daucus carotaGlycine max45.6616.4484.81158forward
CNT30611006Daucus carotaArabis alpina43.0649.0181.21149forward
CNT3051600Daucus carotaAmborella trichopoda22.5420.2688.4678forward

Expression of CNT30624929

Peptides detected in this lncRNA

>peptide 1 (69 aa)
PSGWWEKKSMILQKSKSVNSRAIHVPNLIAKPRGSRMVSGLPRSWITVEKRTMTGVWTPGARRKSAQVR*

>peptide 2 (70 aa)
MDNSREANNDRSLDTRGSEKISTGKMSDIMGDLKETLSTGTPCMDNSFRDPFPGKPSNFLHQRIVLQQNWS

Sequence

>CNT30624929
AACCCTCTGGGTGGTGGGAAAAGAAGTCCATGATTCTCCAGAAGAGTAAAAGTGTGAACTCCAGAGCCATCCATGTGCCTAACTTGATAGCAAAACCTCG
GGGATCACGGATGGTTTCAGGACTCCCACGCTCATGGATAACAGTAGAGAAGCGAACAATGACAGGAGTCTGGACACCCGGGGCTCGGAGAAAATCAGCA
CAGGTAAGATGAGTGATATCATGGGTGACCTCAAAGAAACCCTTAGCACTGGCACCCCTTGCATGGACAATTCTTTCAGGGATCCTTTCCCTGGTAAACC
CAGCAATTTTCTCCACCAAAGGATAGTCCTCCAGCAGAATTGGTCC