Detailed information on CNT30624889


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRV5|METE2_ARATH, E-value = 2e-37

BLAST vs NONCODE:
NONVVIT002763, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535492Daucus carotaEucalyptus grandis48.6857.2885.41185forward
CNT30375849Daucus carotaArabidopsis thaliana47.8916.2586.81182forward
CNT30403132Daucus carotaBeta vulgaris33.6839.8890.62128forward
CNT30504596Daucus carotaNicotiana attenuata33.4220.6588.19127forward
CNT3096726Daucus carotaSolanum tuberosum48.1677.2289.07183forward
CNT30137932Daucus carotaLolium perenne32.8949.686.4125forward
CNT30650401Daucus carotaRosa chinensis52.3722.5984.42199forward
CNT30717191Daucus carotaMalus domestica golden26.0549.2586.8799forward
CNT3024604Daucus carotaPopulus trichocarpa93.4236.5682.54355forward
CNT30118300Daucus carotaCitrus clementina2534.9392.6395forward
CNT30604869Daucus carotaOryza punctata32.8947.8986.4125forward

Expression of CNT30624889

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MLRFPKRQSLSQSSLVNLDDSDTSLLKVFHFILNRQSDLVARPVSIPFIGRFVMLWALEDQKTVIGLGRLTSP*

Sequence

>CNT30624889
GTGGTATCTAGAACCCCGACATTGGTGATTCTGAAGGAGTGCACAGCCCAGTCCAAGTAGAAAGCATGCTCAGATTTCCTAAGAGGCAGTCCCTCTCTCA
AAGCAGCCTCGTCAATCTGGATGACAGTGACACCAGCCTTCTCAAGGTCTTCCACTTCATCCTTAATAGACAAAGCGATCTGGTAGCAAGGCCGGTGAGC
ATTCCCTTCATTGGTCGCTTTGTCATGCTCTGGGCTTTAGAAGACCAGAAAACAGTCATTGGCTTGGGACGGCTAACATCACCATAGATGATTGGTGGTT
TCACACAGCGAGATCCATAAGATTGAACCCATCCATTTGCAGTGAAAGCAAAACCAGACAACTGCTCTCCAAAGTACTCG