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Detailed information on CNT30624536


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001767, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317874Daucus carotaCorylus avellana13.7479.188.08193forward
CNT30516669Daucus carotaJuglans regia27.942.3383.93392forward
CNT30377107Daucus carotaArabidopsis thaliana15.5246.0987.16218forward
CNT30616919Daucus carotaSesamum indicum11.6750.7784.76164forward
CNT30282683Daucus carotaChenopodium quinoa25.6939.284.49361forward
CNT3021611Daucus carotaCitrullus lanatus22.4279.3584.44315forward
CNT3070085Daucus carotaQuercus suber14.8832.0681.34209forward
CNT30380803Daucus carotaManihot esculenta16.1648.482.82227forward
CNT30405510Daucus carotaBeta vulgaris13.3139.7982.35187forward
CNT30708912Daucus carotaGlycine max13.8122.2784.54194forward
CNT3046375Daucus carotaPrunus dulcis29.6159.684.13416forward
CNT30168584Daucus carotaPistacia vera5.0526.288.7371forward
CNT30638211Daucus carotaCapsicum annuum15.4438.8983.41217forward
CNT3098188Daucus carotaSolanum tuberosum15.0942.7480.66212forward
CNT30305192Daucus carotaTriticum aestivum11.8930.8182.04167forward
CNT30398713Daucus carotaTriticum turgidum12.3163.683.24173forward
CNT30567579Daucus carotaActinidia chinensis10.9644.988.31154forward
CNT3085325Daucus carotaVigna radiata27.6254.8881.19388forward
CNT30511681Daucus carotaSolanum lycopersicum11.4648.4984.47161forward
CNT30668803Daucus carotaTriticum dicoccoides21.7139.6681.64305forward
CNT30313019Daucus carotaCamelina sativa18.4342.3279.15259forward
CNT3080335Daucus carotaBrassica juncea11.6728.9280.49164forward
CNT30263082Daucus carotaBrassica rapa18.0875.8281.89254forward
CNT30475173Daucus carotaSaccharum spontaneum22.9943.4781.42323forward
CNT308572Daucus carotaZea mays11.5355.8687.65162forward
CNT30654455Daucus carotaRosa chinensis11.3935.0186.25160forward
CNT30715065Daucus carotaMalus domestica golden29.6129.2583.65416forward
CNT30688530Daucus carotaTriticum urartu11.8939.3982.04167forward
CNT30478285Daucus carotaArabidopsis halleri10.3942.282.19146forward
CNT30368346Daucus carotaSorghum bicolor11.4659.6388.2161forward
CNT30359648Daucus carotaLactuca sativa14.4552.0587.19203forward
CNT30369978Daucus carotaOryza glumipatula11.8922.2481.44167forward
CNT30154060Daucus carotaPrunus persica24.0633.6783.43338forward
CNT30704833Daucus carotaPrunus avium29.6158.2682.93416forward
CNT3022395Daucus carotaPopulus trichocarpa21.7174.2186.56305forward
CNT30119031Daucus carotaCitrus clementina14.2326.3586200forward
CNT3038372Daucus carotaCucumis melo15.7320.0985.07221forward
CNT30576697Daucus carotaOryza barthii8.5427.6582.5120forward
CNT3050211Daucus carotaCucumis sativus26.1997.8780.43368forward

Expression of CNT30624536

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MASSSNKDFTPQSHPCACNLVEYQCHPRGR*

>peptide 2 (35 aa)
FLHHFHFPSSLMTFSLVNICHTDPTTLFSVYFVRV*

>peptide 3 (98 aa)
MSGNFIPSRTKKTGKLFPTRSKLPCMPTKKVSRASPLMDNSGESNNYRCLNTRSSKKISTCKLRNIMGDLKETFGTGTPCMDNTFRNALPIKVGKFLHQ

>peptide 4 (41 aa)
MDHVREFHPVTHKEDRKVVSHQIKVTLYAHQKSVKGFPAHG*

>peptide 5 (64 aa)
ISSSFSLSIIADDIFISKHLPHRSHHFVLRLLCKSVGQLCRMAFSALIIVCSSSFRNYNPIRRF*

Sequence

>CNT30624536
GATTTCTTCATCATTTTCACTTTCCATCATCGCTGATGACATTTTCATTAGTAAACATCTGCCACACAGATCCCACCACTTTGTTCTCCGTTTACTTTGT
AAGAGTGTAGGTCAGTTGTGTCGCATGGCTTTTTCAGCACTCATAATTGTGTGCTCGTCTTCCTTTAGGAACTATAATCCAATAAGAAGGTTCTAGTTTT
CTGCATCAGCTAAATTTCTGCTCTGGATCTCCTCACTTGATAGTTCTCGATAAACAATTTCTGATTCAGCTAAATTTCTGCTCTGGATCTCTTCTCACTT
GATAGTTCTCGATAAACAAGTTCGTTCAGTTCCTGTAATCAGTAATATCGCAGGGCCAAGCAAGCTTTGTCCTGTATCTGCTAATTTGTTCTCTGGTCAA
AAGCAACACATGTAGGCAGACACAAATACTACTGGCTCACCCTATCACGCTTTCCCGTCAACATGGGAGGAGGAATGGGGTGTCTCTCTGCATGGCGTAC
AGGATCAAACCTTGAAGGGAAGTAATTGACCTCCTTAGGAGCATTAGCTGGAAGCTGTAGATAGTTTGGCCCAAGACGGTGCCTTTGGGTATCAGCATAA
GAGAAAATTCTAGTCTGGAGCAGCTTATCATCTGAATAGTAAACACCAGGAACAATAATAGCTGGGCAAAAAGCAAGCTGTTCATTTTCTGCAAAAAAGT
TGTCAATATTCTTATTCAAGACCAAGCGACCCACTGGCATCAGCGGCAAAATGTCCTCAGGCCAGATCTTTGTAACATCAAGTGGGTCGAAGTCAAATTT
GTCCTCATGATCAGGGTCTATGATCTGAATAAAAAGTTTCCACTCAGGATAATTTCCAGCTGCAATTGAATCATATAGATCTTGGGTGGCGTGGCTGTGA
TTAGCTCCCCCGATCTTAATGGCTTCATCCTCTAACAAGGACTTCACTCCACAGAGCCATCCATGTGCCTGTAATCTTGTGGAATACCAATGTCATCCAA
GAGGAAGGTGAACATGTTCAAACTTTCTGGGTGGTGGGAGAAGAAGTCCAAGATTCTCCAGTTCTCTTGAATATGCGACTTGGGATTGGGTTTTAGCGCA
TGGACCATGTCAGGGAATTTCATCCCGTCACGCACAAAGAAGACAGGAAAGTTGTTTCCCACCAGATCAAAGTTACCCTGTATGCCCACCAAAAAAGTGT
CAAGGGCTTCCCCGCTCATGGATAACAGTGGAGAATCGAACAATTACAGGTGTCTGAACACCAGGAGCTCGAAGAAAATCAGCACATGTAAGTTGAGAAA
TATCATGGGTGACCTCAAAGAAACCTTTGGCACTGGCACCCCTTGCATGGACAACACGTTCAGGAATGCGCTCCCTATCAAAGTTGGCAAGTTTCTCCAC
CAAAT