Detailed information on CNT30624310


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30172216Daucus carotaTrifolium pratense38.2152.4183.54893forward

Expression of CNT30624310

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSRVIVFPVRVFTKICIPPRRRRTK*

>peptide 2 (79 aa)
MKSGFLLNVVISQCPTILQLLTSKNQPLLVWGNSLLVLNFRFHIVNCIRTFYFKGNRLPSESLNKDLHATAKAEHQMEG*

>peptide 3 (31 aa)
MVSELSTSSVIVFPVRVFTNICMPPLNLNTR*

>peptide 4 (31 aa)
MVSELSTSKVIVLPVNVFTKICIPPRRRSTR*

>peptide 5 (42 aa)
MSYHPPIAYQQKSTSAGLGEFPPCLEFSLSHCQLYQNFLLQG*

>peptide 6 (48 aa)
MKGRLLLNIVVGQCAAILQLLSSKYKPLLVWWDAFLVLNLCFHIINGV*

>peptide 7 (31 aa)
MINNNSLMYTKREIDIDIERSKLHKSIKIYN*

Sequence

>CNT30624310
TGTGAAATAACATTCTTGGTGTATTTTTTAATTTATTTTTTGTAAGTCAGGGCTTTTAGCCTTCTCTCATAACCTCTGGAACTCTTCTAAATTTAAATTT
CTTCAATTCATTTAACCATTTTTAGGAAAAACATTTGTTTCTTTCTGCTTTGGACCTGTAAAACGTATAATGTAGCATGACTCCGTATATATGAAAACAA
GAAAAAAAGACAACAGATATATCCACCCCAACCTGCCAAGTACCGACCAGGCGACCAGGCTACTATAATGAGTTTCAATCCACCCAAATTATACTAACCA
TATGCATTACAATAACTAATATTGCAACTCTATTTAAAAACGGCATGATAATTAAACCTGATTAAACAAACAACAATTAAACAGCTCAAGAGATTATTAT
ATAATGTACTTCAGAGTACAAATCATAAAGAACGCATCATATTATCGTTCCAAATGAAACTTAGTTCATAGAAAAGAAACATAAACCATCAATGTCAGGC
GAAACCAAGCAAACATTCAGAAAACATTGGTAGAAACAACACTTTAGAAACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGAATGTT
GTAGTCCGCTAAGGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTC
ACGTTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATTGTCTTGCCAGTCAATGTCTTTACAAAGATTTGCATCCCTCCACGCAGACGAAGCACCA
GATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGAT
GCCTTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATC
TGCATGCCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAATGTCCTACCATCCTCCAATTGCTTACCAGCAA
AAATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTACTTCAAGGGTAATCGT
CTTCCCAGTGAGAGTCTTAACAAAGATTTGCATGCCACCGCGAAGGCGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTATAGTCAGCAAGGGTA
CGCCCATCTTCGAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTAT
CAGAACTTTCAACTTCTAGAGTGATAGTCTTTCCGGTAAGGGTCTTTACGAAAATCTGCATTCCCCCACGTAGACGCAGAACCAAATGAAGGGTCGACTC
CTTCTGAATGTTGTAATCGGCCAAGGTCCGTCCATCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA
ATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTTTTCACAAATATCTGCATCTGTATCAATG
CAAACCCAAATTAACATTCAAGTCCAAGAACTATACTCACAGACTTAATAGCCCCTCTACAATCCTTCTAACAAACATAATTAAAAGCAACAAAAAGATC
AATACATACATCCCCAGTGTTCTAAACTTAACTATGTTGTTTACAGATTAAAAAGACACCCTAATTTCAATAATCCTAGAAATCGACATGATCAACAAAA
ATAGTGTAAAGTTCAGCTCAACATAAATCTATAACTACCAGATACAATCTAATTCAAATTAAACAGATGACAAAAATCTAATTTACCATAAATCAACAAT
AGTTACCCGATAAATAAACCAAAAAATACGATCAAATCAGGAAAAACATAGAGGTTAAAACAACAGGATGATCAACAATAATAGTCTTATGTACACAAAA
CGAGAGATCGACATCGATATAGAAAGATCTAAATTACACAAGTCGATCAAAATCTATAACTAACAAAGGCAAAAACAATATAATCAAAGTACGACGAGTA
TAAACAATCACAATCAATATCCACGAGGCAAGATTAGATGTTTAGCGATTCAGATCTCGTACCTTGAGTAGTTGTTGATCGATTAGAATTTTGTATGTAT
AGGCTAGGGTTTGCGATGAGAAAATATAATGAGATGG