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Detailed information on CNT30624277


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42064|RL83_ARATH, E-value = 7e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Daucus carotaSetaria viridis37.6142.6284.36179forward
CNT30512691Daucus carotaJuglans regia45.5913.3682.03217forward
CNT30393881Daucus carotaTriticum turgidum19.1222.5884.6291forward
CNT30592159Daucus carotaMusa acuminata17.4425.6286.7583forward
CNT30511330Daucus carotaSolanum lycopersicum42.0249.0290200forward
CNT30555589Daucus carotaOryza glaberrima62.1816.9682.43296forward
CNT30440426Daucus carotaAegilops tauschii28.7829.2183.21137forward
CNT30652852Daucus carotaRosa chinensis32.1438.4484.97153forward
CNT30721746Daucus carotaTriticum spelta62.1818.4182.77296forward
CNT30367313Daucus carotaSorghum bicolor37.6131.5184.36179forward
CNT30596728Daucus carotaOryza meridionalis23.7423.382.3113forward
CNT30371441Daucus carotaOryza glumipatula20.3823.7783.5197forward
CNT30646445Daucus carotaCannabis sativa66.8192.1783.02318forward
CNT3054135Daucus carotaAmborella trichopoda68.4953.7182.21326forward
CNT3024196Daucus carotaPopulus trichocarpa36.9738.7788.64176forward
CNT30322486Daucus carotaAsparagus officinalis40.7641.3686.6194forward
CNT30151099Daucus carotaBrachypodium distachyon38.4547.6685.79183forward
CNT30104395Daucus carotaOryza rufipogon30.0428.9583.22143forward
CNT30578506Daucus carotaOryza barthii23.747.1183.19113forward
CNT30725998Daucus carotaLupinus angustifolius44.1210086.67210forward

Expression of CNT30624277

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MTNMLVVTTTMRMLNRIHSNTTNLGPAVAFHTILVISISGLKHRLLSSSSTSNLANHCTATTRNNFLGTRWKFDP

Sequence

>CNT30624277
TTAACAAAAAAAACTTCCCTTTTTCTTTGACAATAACAAAAACTTCTAAGACGCATAATTATCAAAGTCTTGATACATAAAACCAGCTTTTAGTCAAAAT
GTTGATTAAGTTGATAAGAAAACACAAAATCTATGCTTAATCAGCTTTAGAAGCAGTAGCAGCAGCTTGCCCACGAAGCCGACCAGTCCTCCTAGCAGCA
ATGAGACCAACCTTTTTACCAGGTGGTGCATCACGACGAACAGTACTGGCATGACCAATATGTTGGTGGTTACCACCACCATGAGGATGCTCAACAGGAT
TCATAGCAACACCACGAACCTTGGGCCAGCAGTTGCGTTTCACACGATACTTGTGATAAGCATTTCCGGCCTTAAGCATAGGCTTCTCAGTTCTTCCTCC
ACCAGCAACCTGGCCAATCATTGCACGGCAACCACTAGGAACAATTTTCTTGGAACCAGATGGAAGTTTGATCCTA