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Detailed information on CNT30624140


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525213Daucus carotaPhaseolus vulgaris75.7182.6182.44689forward
CNT3024143Daucus carotaPopulus trichocarpa74.9590.9384.16682forward

Expression of CNT30624140

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVIVLPVNVFTKICIPPRRRSTR*

>peptide 2 (31 aa)
MVSELSTSSVIVFPVRVFTNICMPPLNLNTR*

>peptide 3 (48 aa)
MKGRLLLNIVVGQCAAILQLLSSKYKPLLVWWDAFLVLNLCFHIINGV*

Sequence

>CNT30624140
CTCTATTTAAAAACGGCATGATAATTAAACCTGATTAAACAAACAACAATTAAACAGCTCAAGAGATTATTATATAATGTACTTCAGAGTACAAATCATA
AAGAACGCATCATATTATCGTTCCAAATGAAACTTAGTTCATAGAAAAGAAACATAAACCATCAATGTCAGGCGAAACCAAGCAAACATTCAGAAAACAT
TGGTAGAAACAACACTTTAGAAACCACCGCGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTCCTTCCATCTTC
CAACTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTCACGTTATCGATGGTGTCTGAGCTCTCC
ACCTCCAAGGTGATTGTCTTGCCAGTCAATGTCTTTACAAAGATTTGCATCCCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATAT
TGTAGTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCTTT
CACATTATCAATGGTGTCTGAGCTCTCAACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCATGCCACCTCTCAACCTCAATACC
AGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCTAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGA
TACCTTCCTTGTCTTGAATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTTTTCACAAATAT
CTGCATCTGT