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Detailed information on CNT30624138


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 5e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Daucus carotaSetaria italica26.4512.182.98141forward
CNT30639598Daucus carotaNymphaea colorata25.1422.4583.58134forward
CNT30549812Daucus carotaIpomoea triloba25.1425.1482.09134forward
CNT30514302Daucus carotaJuglans regia24.7723.1284.09132forward
CNT30135597Daucus carotaLolium perenne19.5120.1285.58104forward
CNT307034Daucus carotaZea mays26.4517.8780.85141forward
CNT30346089Daucus carotaEragrostis tef26.8325.4481.12143forward
CNT30597257Daucus carotaOryza meridionalis26.4528.2685.11141forward
CNT30371492Daucus carotaOryza glumipatula26.4526.2684.4141forward
CNT3053146Daucus carotaAmborella trichopoda25.1421.2783.58134forward
CNT30108688Daucus carotaOryza longistaminata26.4525.1385.11141forward
CNT30104475Daucus carotaOryza rufipogon26.4525.0985.11141forward
CNT30578401Daucus carotaOryza barthii26.4525.2285.11141forward
CNT30118085Daucus carotaOryza nivara26.4526.485.11141forward

Expression of CNT30624138

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDRRQMEEQKPKGQKPKANENKPVMSE*

Sequence

>CNT30624138
GCCCAATAATGTATATAAATGATGCAGTGACAGATTGAAAGCTAGGGTTTGTAAATTGGGGGAGATTAGCAGCTGCAACTCATAAAGTAACAAGATGATT
TACGACGTGAATTCACCTCTTTTCCGATCATTTCTCAGCCAGAAGGGCGGCGCCTCTTCTGATAGGAGGCAAATGGAGGAGCAAAAGCCAAAGGGACAGA
AGCCAAAAGCAAATGAGAATAAGCCTGTGATGTCGGAATGAGCGATCACTGTGTGTAGTTGCTGAAATGTTGCATGTCTTTTAGCGCTTTTAAAAGTGTT
TGTAAGATGTCTATGTCAAGTCAAACGGGTTATGTAGAAACTTGAATGTCTATTATGTACCAACTTTAATTTGGCAATGTGATATGTTATTGGAATAGAC
CTTTCCAAGTAATTAATGGATGTGGTTTTTTAAACTTAGCGTGATGTCTTATTAGTTAAACTGGCATTGTGATTGCTATATATATATGAAGCTTTGATAA
TGAGCTTGCTGCTGTTTTTGATTTTATGTTCAA