Detailed information on CNT30624002


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3097927Daucus carotaSolanum tuberosum70.7797.4483.011295forward

Expression of CNT30624002

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 2 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 3 (62 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRILTNIYSFYLINREIAYITQRRETERERYLPCN*

>peptide 4 (67 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQNLNQHL*

>peptide 5 (52 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 6 (36 aa)
KNKFIHQHLNNHSNCSSHTRSLNKVHKKRTNSSDTN*

>peptide 7 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTR*

Sequence

>CNT30624002
TAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATC
AGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCT
ACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCT
GAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCATACCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCT
TCTGGATATTGTAGTCTGCAAGGGTCCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAAT
TTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCAAGGGTGATTGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCATTCCACCACGAAGA
CGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGT
CTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTT
GACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCCAGTTGC
TTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCCGAGCTCTCAACCTCCA
GGGTAATAGTCTTGCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCACGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATC
AGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTG
TCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAA
GGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTC
CTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATA
CCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAA
GACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCC
GGTCAGAATCTTAACCAACATCTATAGCTTCTATCTAATCAATAGAGAAATAGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCT
TGCAATTGAAGAGAAAAGAGATTTGTTGTG