Detailed information on CNT30623991


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538027Daucus carotaBrassica napus62.3972.3681.781372forward

Expression of CNT30623991

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTR*

>peptide 2 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 3 (61 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTRWSVDSFWML*

>peptide 4 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

>peptide 5 (85 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 6 (40 aa)
NIDIYQGSSTRIYKCYIKHNNYLKTNKQITKKQVYSPTLE*

>peptide 7 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 8 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

Sequence

>CNT30623991
TAACATAGACATATATCAGGGATCTTCAACACGCATATATAAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAA
GTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAAC
TAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCA
AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCA
CCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCATACCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATT
GTAGTCTGCAAGGGTCCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTTTGCTTTG
ACGTTGTCAATAGTGTCAGAGCTCTCAACTTCAAGGGTGATTGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCATTCCACCACGAAGACGCAACACAA
GATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAAT
TCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACAAAAATC
TGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCCAGTTGCTTACCAGCGA
AGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCCGAGCTCTCAACCTCCAGGGTAATAGT
CTTGCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCACGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGCTAGGGTT
CTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTGTCAATAGTAT
CCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGATGGAGTGTGGACTC
CTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG
ATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCATCTGCACATCAC
ATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACATAACACACGCAATAAAACCTATACGAT
GAATCAATTGAACATCACGTTTTATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATACACACAATAAAAAAGAATCAATTAAACA
TCTAACAAAATTACAGATCAGGATCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGTATATATTGTTACAAAATTAGAGGAACG
AATTGATGCGTTCAGATCTTGACATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCAGATCTGTATGTACATGTAAAGATTAAT
ACATAATGATACGAACAAATCACCTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTTAACCAACATCTATAGCTTCTATCTAAT
CAATAGAGAAATAGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGAGAAAAGAGATTTGTTGTGTTGGGTTG