Detailed information on CNT30623951


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30642231Daucus carotaCannabis sativa61.7380.9482.52858forward

Expression of CNT30623951

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 2 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 3 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRRRRTRWSVDSF*

>peptide 4 (40 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTRWSVDSFWML*

>peptide 5 (54 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNE

>peptide 6 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

>peptide 7 (30 aa)
RIYKCYIKHNNYLKTNKQITKKQVYSPTLE*

Sequence

>CNT30623951
ACGCATATATAAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAG
TAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACG
GAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGC
TGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAG
TCTTCACGAAAATCTGCATACCACCACGGAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAA
CTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACT
TCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCACGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGT
AATCAGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCAC
ATTGTCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGG
TGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGC
CCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTG
CATACCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAA
ATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCT
TTCCGGTCAGAGTTTTCACAAAGATCTGCATCTGCACATCACATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAAT