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Detailed information on CNT30623873


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 6e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30334721Daucus carotaCynara cardunculus20.9919.9487.14140forward

Expression of CNT30623873

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTVPIKPPRTLAHTPNLSASLGQLAGGVMGWW*

Sequence

>CNT30623873
ATTACAATTTTAAGCACAAAGTGAAATATAAGCGAATCAGATAGAAAAGAGGACTATAGCAACACAAAAGTAAAACTCAAGGAAATTTTTCGAGAAAAAA
AAAAACTTTGGTTTAATTACACGCATTTGAAGCCCTTGGGGACCTTCTTGCCACAGTAGTTAATCAACAAGCTCAAATCAACCGGAACATTGAGGTTAAT
ACCCAAGATATTGGCTTTAATCGCGGTGCAGAGACAAATAGCAGCTTCAAGATCGACAAGGCCTTCGAGGAGACTACAGCATGGCAGCTTAGGTGGAGTT
CCAATGACCGTCCCGATCAAGCCACCTAGAACCTTGGCACACACTCCCAACTTGAGTGCATCTCTAGGGCAGCTTGCTGGTGGAGTGATGGGGTGGTGGT
GAGGTGGTGGCGGTGGGCAAAGTGGCTTCGGGGGTGTTGGTGTAGGTGTTGGAGTTGGTGGTGGTGGTGGAGGGCAGCTAGGTTTCGGCATTGGGGGTGG
GGGGCATTTAGGTTTCGGCATTGGTGGTGGTGGGCATGGAGTGTGATGAGTTGAAGTTACTAAAGTGAGGAAGAGAAGGTTAAGGACTAGGAAGAAAGAT
GTGGATGCTAATGCCTTTGAAGCCATGCTGCAGAGACTTCTTTGCTATGTTAGGAGAGGAGAGATTC