Detailed information on CNT30623822


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3051129Daucus carotaCucumis sativus46.9295.4884.38845forward

Expression of CNT30623822

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 2 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

>peptide 3 (85 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 4 (40 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTRWSVDSFWML*

>peptide 5 (31 aa)
MVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 6 (60 aa)
IKHYFRYSNLDLNRLLQSRHNIDIYQGSSTRIYKCYIKHNNYLKTNKQITKKQVYSPTLE*

>peptide 7 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

Sequence

>CNT30623822
CATTAAGCACTATTTTCGTTATTCGAACTTAGATCTAAACCGGTTGTTGCAATCTAGACATAACATAGACATATATCAGGGATCTTCAACACGCATATAT
AAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCT
TCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAG
ACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAG
GAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAA
AATCTGCATACCACCACGGAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAACTGCTTACCA
GCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAA
TAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAG
AGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATT
GTGTCTGAGCTCTCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCGCGGAGACGGAGGACAAGATGGAGTGTGG
ACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTC
CTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCATCTGCACA
TCACATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACATAACACACGCAATAAAACCTATA
CGATGAATCAATTGAACATCACGTTTTATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATACACACAATAAAAAAGAATCAATTA
AACATCTAACAAAATTACAGATCAGGATCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGTATATATTGTTACAAAATTAGAGG
AACGAATTGATGCGTTCAGATCTTGACATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCAGATCTGTATGTACATGTAAAGAT
TAATACATAATGATACGAACAAATCACCTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTTAACCAACATCTATAGCTTCTATC
TAATCAATAGAGAAATAGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGAGAAAAGAGATTTGTTGTGTTGGG
T