Detailed information on CNT30623810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-155

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540597Daucus carotaBrassica napus53.0153.9283.93915forward
CNT30235198Daucus carotaBrassica oleracea48.0975.5982.77830forward
CNT30262720Daucus carotaBrassica rapa53.0173.4983.61915forward

Expression of CNT30623810

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GSSTRIYKCYIKHNNYLKTNKQITKKQVYSPTLE*

>peptide 2 (85 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 3 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

>peptide 4 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

Sequence

>CNT30623810
AGGGATCTTCAACACGCATATATAAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACT
TGAATAACCACAGTAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGA
AATTGCCACCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCAAGGGTCCTGCCATCCTCCAACTGCTTTCCAGCAAA
GATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCAAGGGTGATTGTC
TTCCCAGTCAGGGTCTTGACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCC
TGCCATCCTCCAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATC
CGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCC
TTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAA
TCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCGCGGAG
ACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGA
TCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTT
TCACAAAGATCTGCATCTGCACATCACATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACA
TAACACACGCAATAAAACCTATACGATGAATCAATTGAACATCACGTTTTATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATAC
ACACAATAAAAAAGAATCAATTAAACATCTAACAAAATTACAGATCAGGATCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGT
ATATATTGTTACAAAATTAGAGGAACGAATTGATGCGTTCAGATCTTGACATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCA
GATCTGTATGTACATGTAAAGATTAATACATAATGATACGAACAAATCACCTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTT
AACCAACATCTATAGCTTCTATCTAATCAATAGAGAAATAGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGA
GAAAAGAGATTTGTTGTGTTGGGTTG