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Detailed information on CNT30623807


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K5P9|GL22_ORYSJ, E-value = 3e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071407Daucus carotaQuercus suber6.4120.8591.8449forward

Expression of CNT30623807

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MMVRISVARGWVCGALIPHGAKSIRTREMPRVLSPGILPTLTVVTFDPTRFFDVSPATFNPLVKKSFSVTTLGSLQTSPL

>peptide 2 (90 aa)
MFICLKSCLQLFDGVFVQLESLGKNISRYIRIGSEYSVCNGDNPGILAAKSSNHYRIIMSNVLLIMYKTFWEHKHISFIEDFGDVTIFCI*

>peptide 3 (36 aa)
MGVWSIDSPWCKVDTNKRNAESVESRNPANINCCYV*

Sequence

>CNT30623807
GACTAATTTAAATACTGAAATAAATGTTTAAAAGCTTACAGATTTCTAAATAAAACAAAACAACCCCAATCACCTGAGGTTTTTATTTGAAGCTCGAAAT
CGAGAAGAGCATATATTGCCATACAAAGATTATAAGACGAAGCAACAATTTCAAATCAAATGACGCCGAACACTAATTCAACGTCTCAGCAGCCATAACA
CACTATTTCATGAATCCAGAATGTTCATCTGCTTAAAATCGTGCCTGCAGTTGTTTGACGGTGTTTTCGTTCAGCTGGAAAGCCTTGGCAAGAATATCAG
CCGATATATCAGGATTGGCTCCGAATACAGCGTTTGCAATGGTGATAACCCCGGGATTTTGGCTGCTAAGAGCAGCAATCACTACCGCATTATCATGTCC
AATGTTTTGCTGATAATGTATAAGACCTTCTGGGAACACAAACACATCTCCTTCATTGAGGACTTTGGTGATGTGACGATTTTCTGTATTTGAGGTCACA
AATCCCACCCGCAGTGTACCTTTTATGATGGTCAGAATTTCAGTAGCACGAGGATGGGTGTGTGGAGCATTGATTCCCCATGGTGCAAAGTCGATACGAA
CAAGAGAAATGCCGAGAGTGTTGAGTCCAGGAATCCTGCCAACATTAACTGTTGTTACGTTTGATCCTACCAGATTTTTTGATGTGTCACCGGCCACGTT
CAATCCGCTAGTGAAGAAGTCATTTTCAGTTACAACCTTGGGGTCCTTACAGACTAGTCCATTAA