Detailed information on CNT30623804


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30120444Daucus carotaCitrus clementina63.0684.0181.191340forward

Expression of CNT30623804

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 2 (38 aa)
LLKNKFIHQHLNNHSNCSSHTRSLNKVHKKRTNSSDTN*

>peptide 3 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 4 (52 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 5 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTR*

>peptide 6 (62 aa)
MVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 7 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

Sequence

>CNT30623804
TTACTAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATT
CATCAGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAG
TCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGT
ATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCATACCACCACGGAGACGCAACACAAGGTGAAGGGTAGAC
TCCTTCTGGATATTGTAGTCTGCAAGGGTCCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCT
GAATTTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCAAGGGTGATTGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCATTCCACCACG
AAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGT
TGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAATAGTCTTTCCTGTCAAGG
TCTTGACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCCAG
TTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCCGAGCTCTCAACC
TCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCACGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGT
AATCAGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCAC
ATTGTCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGG
TGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGC
CCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTG
CATCTGCACATCACATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACATAACACACGCAAT
AAAACCTATACGATGAATCAATTGAACATCACGTTTTATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATACACACAATAAAAAA
GAATCAATTAAACATCTAACAAAATTACAGATCAGGATCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGTATATATTGTTACA
AAATTAGAGGAACGAATTGATGCGTTCAGATCTTGACATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCAGATCTGTATGTAC
ATGTAAAGATTAATACATAATGATACGAACAAATCACCTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTTAACCAACATCTAT
AGCTTCTATCTAATCAATAGAGAAATAGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGAGAAAAGAGATTTG
TTGTGTTGGGTTGAGAGGAGAGAAT