CANTATAdb - search

Detailed information on CNT30623641

BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 1e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30599147	Daucus carota	Fraxinus excelsior	10.27	20.19	85.94	64	forward

Expression of CNT30623641

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLRVKKRAIEALFLEPISQTAERLMRGIVNA*

>peptide 2 (56 aa)
MAVQRHTAASRLTRPSRRLQHGSVGGDPITTLCTKLRTSAQTPNFRASLGHFPADG*

>peptide 3 (51 aa)
MDPQNVGFNGCAKAYRGLEVDEAFKKAAAWECWWRSNHNIVHQVEDISTNT*

Sequence

>CNT30623641
TTCCATTGAATTGCTTCATAAATGACAAAAAAAAAAAATTAATATATTGTTAAGCCAACAATACTGCAATCAGAAACAGCACACTTTACAATAATCAAAA
ACACAAAGAACAAAATCCAGAAAGCACATCATGATCCTTCTCTCACACTAGAAATTTTAGGTACATTCGAAGCCATTTGGGACTTGCTTGCCGCAGTTGT
TTAGAACTAAGCTGAGGGCAATAGGAAGATTGAGATGGATCCCCAGAACGTTGGCTTTAATGGCTGTGCAAAGGCATACCGCGGCCTCGAGGTTGACGAG
GCCTTCAAGAAGGCTGCAGCATGGGAGTGTTGGTGGAGATCCAATCACAACATTGTGCACCAAGTTGAGGACATCAGCACAAACACCTAATTTTAGGGCA
TCCTTAGGGCATTTTCCTGCAGATGGATAAGGAGTGGGAGTTGGCTTGGGAGTGGGCTTGGGCTTAGGCTTATAAGGATCAGGGCATTTTTCAGTGGAAC
TGACCAAGGCAAAGAAGAGAATGTTGAGGGTGAAAAAGAGAGCTATTGAAGCACTGTTCTTGGAACCCATCTCTCAAACTGCAGAAAGGCTAATGAGGGG
TATTGTTAATGCCTAGAAGAGTG