Detailed information on CNT30623620


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-43

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514590Daucus carotaJuglans regia38.4316.0182.46211forward
CNT30727206Daucus carotaCorchorus capsularis38.989.2982.71214forward
CNT30525342Daucus carotaPhaseolus vulgaris22.412.0785.37123forward
CNT30620550Daucus carotaCajanus cajan38.6217.781.13212forward
CNT30356658Daucus carotaLactuca sativa38.4312.8383.41211forward

Expression of CNT30623620

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKLQEFIYEPNKIDKYMKSTDRLISILAGEQ*

>peptide 2 (46 aa)
RENKQLDIYNHQQSLHNNPSYFKFPVLEIKCMTQIFRGAGKTSRYK*

Sequence

>CNT30623620
CAGGGAAAACAAACAACTAGATATATATAATCACCAACAATCGCTACATAATAATCCTTCATATTTCAAATTTCCTGTGCTGGAGATAAAATGTATGACA
CAAATATTTAGAGGTGCAGGAAAAACAAGTAGATATAAATAATCACCAACAATCGCTACATATAATCCTCGTAGTTAAAATTTCCTTGTGTTGGAGATAT
TGTGGGTGTTATTGAGAAACATAAAACTGAAAGGAATGAAATGAAATTGCAAGAGTTTATATATGAGCCGAACAAGATAGATAAATATATGAAATCAACA
GACAGATTGATCAGCATTCTGGCTGGTGAGCAATGAAACTGATGCACTGGACTTGGCGAACGTTGTCGAATCCGATGATACGGACGTAGGCCTGGGGGTA
CTCCTTGACGCACTCATCAAGCTCCTTCAACACCTGCGATGAGTCGGTGCACCCGAACATGGGAAGCTTCCACATAACCCAGTATCGTCCGTCATAGTAT
CCGGGGGATTTGTTGTGCTCACGGTACACGAAACCGTGCTACATTTCGG