Detailed information on CNT30623574


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30477816Daucus carotaArabidopsis halleri49.7484.4184.9682forward

Expression of CNT30623574

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 2 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 3 (54 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNE

>peptide 4 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

>peptide 5 (40 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTRWSVDSFWML*

Sequence

>CNT30623574
ATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCTTCCCACACA
AGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAGACCAAGTGA
AGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTT
CCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAAAATCTGCAT
ACCACCACGGAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATC
AACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAATAGTCTTTC
CTGTCAAGGTCTTGACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCC
ATCCTCCAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCCGAG
CTCTCAACCTCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCT
GAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAATCTT
GGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCGCGGAGACGG
AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAG
GAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCAC
AAAGATCTGCATCTGCACATCACATAAACACAAAATTAAAACAATTTTTATCAATTCAACAACTAACGAAT