Detailed information on CNT30623461


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30637282Daucus carotaCapsicum annuum55.0169.4382.221367forward
CNT30145248Daucus carotaMedicago truncatula64.1981.2582.011595forward

Expression of CNT30623461

Peptides detected in this lncRNA

>peptide 1 (60 aa)
IKHYFRYSNLDLNRLLQSRHNIDIYQGSSTRIYKCYIKHNNYLKTNKQITKKQVYSPTLE*

>peptide 2 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

>peptide 3 (52 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 4 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

>peptide 5 (85 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 6 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 7 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 8 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTR*

Sequence

>CNT30623461
CATTAAGCACTATTTTCGTTATTCGAACTTAGATCTAAACCGGTTGTTGCAATCTAGACATAACATAGACATATATCAGGGATCTTCAACACGCATATAT
AAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACTTGAATAACCACAGTAACTGTTCT
TCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGAAATTGCCACCACGGAGACGCAAG
ACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAG
GAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCGGTCAGAGTCTTCACGAA
AATCTGCATACCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCAAGGGTCCTGCCATCCTCCAACTGCTTTCCA
GCAAAGATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCAAGGGTGA
TTGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCATTCCACCACGAAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAG
GGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATG
GTATCTGAACTCTCAACTTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTG
ACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCCAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTC
CTGGATCTTAGCTTTCACATTGTCAATCGTATCCGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCA
CGGAGACGGAGGACCAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCT
GCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTGTCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAA
GGTCTTGACGAAAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCG
AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGA
CTTCCAGAGTGATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTT
GTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTG
ACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCATCTGCACATCACATAAACACAAAA
TTAAAACAATTTTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACATAACACACGCAATAAAACCTATACGATGAATCAATTGAA
CATCACGTTTTATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATACACACAATAAAAAAGAATCAATTAAACATCTAACAAAATT
ACAGATCAGGATCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGTATATATTGTTACAAAATTAGAGGAACGAATTGATGCGTT
CAGATCTTGACATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCAGATCTGTATGTACATGTAAAGATTAATACATAATGATAC
GAACAAATCACCTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTTAACCAACATCTATAGCTTCTATCTAATCAATAGAGAAAT
AGCATATATAACGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGAGAAAAGAGATTTGTTGTGTTGGGT