« Back to Daucus carota search


Detailed information on CNT30623157


BLAST search results

BLAST vs Swiss-Prot:
sp|P46486|PSAF_FLATR, E-value = 3e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513785Daucus carotaJuglans regia21.8234.7382.87216forward
CNT30371574Daucus carotaArabidopsis thaliana14.1427.0882.14140forward
CNT30618119Daucus carotaSesamum indicum21.8242.1185.19216forward
CNT30273262Daucus carotaChenopodium quinoa21.8213.0584.26216forward
CNT3019440Daucus carotaCitrullus lanatus21.8256.9982.41216forward
CNT30525128Daucus carotaPhaseolus vulgaris13.8431.7980.29137forward
CNT3091235Daucus carotaSolanum tuberosum24.3420.1282.99241forward
CNT30562388Daucus carotaActinidia chinensis21.6220.1382.24214forward
CNT3086376Daucus carotaVigna radiata13.8423.1881.75137forward
CNT30144134Daucus carotaMedicago truncatula16.8731.9983.83167forward
CNT30313614Daucus carotaCamelina sativa14.1436.0882.14140forward
CNT30609169Daucus carotaGossypium raimondii12.9330.3381.25128forward
CNT30716553Daucus carotaMalus domestica golden14.4421.7784.62143forward
CNT3038681Daucus carotaCucumis melo21.8253.8781.02216forward
CNT3040196Daucus carotaMarchantia polymorpha9.934.3986.7398forward

Expression of CNT30623157

Peptides detected in this lncRNA

>peptide 1 (94 aa)
TELCPGFRRVQTVHILMFYYNFKGTDYTNLKKKIPSLRFHEKLMYISCSITLRINRGLIDKKTHTGLDRGVNQISIEVSSVSSHRPAEASEEEL*

>peptide 2 (59 aa)
MSADAGSTGAESRIEDSARAAENALSDDAELSWSAEVEILLFCGAAEQTILASFGFAVN*

Sequence

>CNT30623157
AACAGAATTGTGTCCTGGCTTTCGTAGAGTCCAAACAGTACATATATTAATGTTCTACTACAATTTTAAAGGTACAGATTACACAAATTTAAAAAAAAAA
ATTCCATCACTCCGCTTCCATGAAAAGTTGATGTACATTTCTTGTAGCATTACATTAAGAATAAACAGAGGACTGATAGATAAAAAGACACACACAGGTT
TAGACAGAGGGGTCAATCAGATCTCCATTGAGGTAAGCTCTGTAAGCAGCCACAGGCCAGCTGAAGCCTCTGAAGAGGAGCTTTGATGCCAACGGAACAT
CGATGATGATCTCCTTCTGTGTCGGCTTCTTCTCATCTCTGATTGCAATCAGGTAGCTCCTTCCGACCCATCCAATCCATCCGGCAATATACAAGAACAA
AATCCCTGGAGTAATGAACTCTCCCCAGTGTCTTTGATCACCACTCACTATCAGATGTGGAGCACTATCTGGTGCATAAATTTTGAGTGAGGACTCGAGC
TTCTTGAGTTGTTGCTTTTCCCTCTTAGCAAACTGTTTAGAATCCTTGCATGGGGTGAGCCCTGCAATGTCTGCGGATGCCGGGAGCACCGGAGCCGAGA
GCAGAATTGAGGACAGTGCTAGAGCAGCTGAGAATGCCTTGAGTGATGATGCTGAGCTCTCCTGGTCTGCAGAAGTGGAGATATTATTGTTCTGTGGTGC
AGCAGAGCAGACAATATTAGCTAGCTTTGGCTTTGCTGTGAACTGAGAGTTGAGCCTGGGGTTTGAAATTGGCTTGTAGAGGTTTGTGGGAATTGAGAGA
GCCATGGCTAGACACTGATTGTGAGCTGTTTGTTGTGTGTGTTTCTTGGGGCTGGAGTGTGGAGAGGATGAGATGGTGTTTTGTTGTTTAGATTTAGAGA
GAAGGGATTGGTGGCTGCAGAGAGGATAAGATGTGGAATTGAATAAGTGGAAGATGTCTGAGTTGTTTGGTTCTAATTGGCTGTTGGTAT