« Back to Daucus carota search


Detailed information on CNT30623044


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528977Daucus carotaEucalyptus grandis46.4568.3684.28916forward
CNT30513431Daucus carotaJuglans regia34.8470.5386.17687forward
CNT30500348Daucus carotaCoffea canephora43.0556.4184.69849forward
CNT30279009Daucus carotaChenopodium quinoa56.973.4383.961122forward
CNT30526024Daucus carotaPhaseolus vulgaris46.268.8684.52911forward
CNT30629220Daucus carotaVigna unguiculata48.3388.2483.21953forward
CNT3044330Daucus carotaPrunus dulcis46.274.4985.62911forward
CNT30156103Daucus carotaPistacia vera47.1178.4683.96929forward
CNT30636316Daucus carotaCapsicum annuum56.2453.585.031109forward
CNT3096981Daucus carotaSolanum tuberosum51.3790.285.781013forward
CNT3061767Daucus carotaArabidopsis lyrata46.3555.9783.37914forward
CNT3073617Daucus carotaBrassica juncea57.9633.8482.941143forward
CNT30229013Daucus carotaAnanas comosus56.6970.8982.291118forward
CNT30217449Daucus carotaKalanchoe fedtschenkoi57.9175.6883.361142forward
CNT30652285Daucus carotaRosa chinensis46.475.1885.57915forward
CNT30716337Daucus carotaMalus domestica golden52.9984.3484.981045forward
CNT30154607Daucus carotaPrunus persica47.2672.9383.37932forward
CNT30110940Daucus carotaOryza longistaminata57.0541.4882.491125forward
CNT30174646Daucus carotaVigna angularis45.1385.4185.06890forward
CNT30334102Daucus carotaCynara cardunculus56.8550.8682.781121forward

Expression of CNT30623044

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVKVLTKICIPPRRRRTKWRVDSFWIL*

>peptide 2 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRRRSTR*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSLRTKWRVDSFWML*

>peptide 4 (56 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICTSTQSQQFRLHSNQTTNYV*

Sequence

>CNT30623044
ATTAAACCAGAAACTATCACACGACCACAGCAAAATACTTATTAAACTGATCTTTTATTAAGACTTAAAGCCACCACAACACATTGTTCTTTCCCCCACA
GGGGAAAACACTAAAACAAACTTTGATTTAAAACAAACAAGTTCAACAGAAACACAAACTTCTTTTCAGAAACCACAGCCACGGGCGCTTCCAACAGGCT
TAGAGATCACCACCACGAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAG
CAAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGAT
AGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCATACCACCACGGAGACGGAGCACAAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCAGCTAGG
GTCCTGCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGG
TGTCAGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAGAGTGGA
CTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTTCCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC
TGGATCTTGGCCTTGACATTGTCGATCGTATCAGAGCTCTCGACCTCAAGGGTGATTGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATACCACCAC
GGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTG
CTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCTGTCAAA
GTCTTGACGAAGATCTGCATACCACCACGAAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAA
GTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGAC
CTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCATCTGTACATCAACACAATCACAACAATTTAGACTACATTCAAATCAAACAACT
AATTATGTCTGACAACACATATCTACGTCTATTTAAACAATGAAACAATCAAAGCAGCCCTAATTTTATTAAGAAAAATATACATATACACAGAGATTTG
CATCGGTGTAATAATCTCGATTAAATCAACAAACCAGCACTAATACAATCACAACAAGACTAAATTAATAACTAATTAGGTCAACTATCACGCATCTGAA
TAAACCCAAATCAATAAACCTAAAATCAACCACTATTTAGGTAAAGCACAAGGCTCTCCGTCTTTGTAGAGATGTAAACACGATTAAATCAACAAATTGA
CATAACCTTGATGATAAAAAACAGATGAACATCTAATTAGGTCAAAAACAACGAAATCTATGCATATATATACACGTATAAACATAATCAAAACAACAAA
TTTTCGCCAATTTAATCGTAATTAACAGCATGAACATATAATTAGCGACTAACAGAATGAAAAAGAAGAGAGATTGAAAACATACCTTGAAATTGATGAA
AATATAGAGACAGAAAAGTGTATGTATATGATGAGAAGAGAAAGATAATTGTGAGGAGAAGAGGAGATGAGG