« Back to Daucus carota search


Detailed information on CNT30623040


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274489Daucus carotaChenopodium quinoa79.8472.4784.78887forward
CNT30710308Daucus carotaGlycine max59.2371.2186.63658forward
CNT30480747Daucus carotaArabidopsis halleri82.3678.8883.39915forward
CNT3026527Daucus carotaPopulus trichocarpa78.2288.9584.12869forward
CNT3050777Daucus carotaCucumis sativus80.7492.3884.62897forward

Expression of CNT30623040

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICIC

>peptide 2 (40 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSLRTKWRVDSFWML*

>peptide 3 (30 aa)
MVFPVKVLTKICIPPRRRRTKWRVDSFWIL*

>peptide 4 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRRRSTR*

Sequence

>CNT30623040
TATCACACGACCACAGCAAAATACTTATTAAACTGATCTTTTATTAAGACTTAAAGCCACCACAACACATTGTTCTTTCCCCCACAGGGGAAAACACTAA
AACAAACTTTGATTTAAAACAAACAAGTTCAACAGAAACACAAACTTCTTTTCAGAAACCACAGCCACGGGCGCTTCCAACAGGCTTAGAGATCACCACC
ACGAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTC
TGCTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGTCTTTCCAGTCA
GAGTCTTAACAAAGATCTGCATACCACCACGCAGACGAAGCACAAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCAGCTAGGGTCCTGCCATCTTC
CAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA
ACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGT
TGTAGTCGGCAAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT
GACATTGTCGATCGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATCTGCATACCACCACGAAGACGGAGGACC
AAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAA
TGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGAT
TTGCATCTGTA