Detailed information on CNT30623039


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003894, E-value = 4e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524662Daucus carotaSetaria italica99.6232.2694.25261reverse complement
CNT30616920Daucus carotaSesamum indicum94.6625.3893.55248forward
CNT30710098Daucus carotaGlycine max48.4740.4593.7127forward
CNT30220886Daucus carotaHordeum vulgare10049.2593.89262reverse complement
CNT30248027Daucus carotaAvena sativa10026.993.51262forward
CNT3082954Daucus carotaBrassica juncea67.9415.0891.57178reverse complement
CNT30609809Daucus carotaGossypium raimondii85.1152.4790.13223reverse complement
CNT30126841Daucus carotaCorymbia citriodora22.1415.5910058reverse complement
CNT30100804Daucus carotaOryza rufipogon96.1831.3894.44252reverse complement
CNT30574740Daucus carotaOryza barthii49.2426.2293.02129reverse complement

Expression of CNT30623039

Peptides detected in this lncRNA

>peptide 1 (67 aa)
GSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSTTARAGASL*

>peptide 2 (42 aa)
MFALLKPTFSLPLRPLPLARVLPSKAERSPTDVFLHPTASADR

Sequence

>CNT30623039
GGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAC
CCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACTACCGCTCGCGCGGGTGCTTCC
CTCTAAGGCGGAACGCTCCCCTACCGATGTATTTTTACATCCCACAGCTTCGGCAGATCGCT