Detailed information on CNT30623024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LAA6|PIP15_ARATH, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549105Daucus carotaIpomoea triloba21.3212.4888.7371forward
CNT30515171Daucus carotaJuglans regia25.238.989.2984forward
CNT30502187Daucus carotaNicotiana attenuata37.243.4186.29124forward
CNT30163276Daucus carotaPistacia vera36.3439.2983.47121forward
CNT30560771Daucus carotaActinidia chinensis36.0415.7789.17120forward
CNT30590280Daucus carotaMusa acuminata27.6317.7382.6192forward
CNT30599410Daucus carotaFraxinus excelsior30.9315.5485.44103forward
CNT3024497Daucus carotaPopulus trichocarpa22.5226.6986.6775forward
CNT30112149Daucus carotaFicus carica25.8310.9689.5386forward

Expression of CNT30623024

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PPLSSNLDDPSNPLITPAPQIAPRPSPFV*

Sequence

>CNT30623024
CCGCCATTGAGCTCAAATCTTGATGATCCTTCAAACCCCTTGATAACACCAGCACCACAGATAGCACCAAGACCATCACCCTTTGTGTAGCCATGATTCA
CAGCATTAGCTCCCCCACCATTGAGCTCAAATTTTGAGGATCCTTGAAAGCCCTTTATAACACCAGCACCACAGATAGCACCAAGGCACTGCATCACTAT
GTAGAACAATGCCCTGGTCAACGAAAGCTTCCTTCCCAGAAATAAACCAAAGGTCACAGCAGGGTTGATATGTCCTCCTGTTTATTACAATTAAACAACA
CAAGGCCTCAATTAATTTTCAAAGACTGAAAAC