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Detailed information on CNT30622888


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 2e-162

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238962Daucus carotaBrassica oleracea53.4847.2884.79914forward
CNT3051100Daucus carotaCucumis sativus53.5464.3984.48915forward

Expression of CNT30622888

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRRRSTR*

>peptide 2 (40 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSLRTKWRVDSFWML*

>peptide 3 (56 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICTSTQSQQFRLHSNQTTNYV*

Sequence

>CNT30622888
TATCACACGACCACAGCAAAATACTTATTAAACTGATCTTTTATTAAGACTTAAAGCCACCACAACACATTGTTCTTTCCCCCACAGGGGAAAACACTAA
AACAAACTTTGATTTAAAACAAACAAGTTCAACAGAAACACAAACTTCTTTTCAGAAACCACAGCCACGGGCGCTTCCAACAGGCTTAGAGATCACCACC
ACGAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTC
TGCTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGTCTTTCCAGTCA
GAGTCTTGACAAAGATCTGCATACCACCACGGAGACGGAGCACAAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCAGCTAGGGTCCTGCCATCTTC
CAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA
ACCTCAAGAGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGT
TATAGTCAGCAAGGGTCCTTCCATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTT
GACATTGTCGATCGTATCAGAGCTCTCGACCTCAAGGGTGATTGTCTTTCCTGTCAAGTCTTGACGAAGATCTGCATACCACCACGAAGACGGAGGACCA
AATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAAT
GCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATT
TGCATCTGTACATCAACACAATCACAACAATTTAGACTACATTCAAATCAAACAACTAATTATGTCTGACAACACATATCTACGTCTATTTAAACAATGA
AACAATCAAAGCAGCCCTAATTTTATTAAGAAAAATATACATATACACAGAGATTTGCATCGGTGTAATAATCTCGATTAAATCAACAAACCAGCACTAA
TACAATCACAACAAGACTAAATTAATAACTAATTAGGTCAACTATCACGCATCTGAATAAACCCAAATCAATAAACCTAAAATCAACCACTATTTAGGTA
AAGCACAAGGCTCTCCGTCTTTGTAGAGATGTAAACACGATTAAATCAACAAATTGACATAACCTTGATGATAAAAAACAGATGAACATCTAATTAGGTC
AAAAACAACGAAATCTATGCATATATATACACGTATAAACATAATCAAAACAACAAATTTTCGCCAATTTAATCGTAATTAACAGCATGAACATATAATT
AGCGACTAACAGAATGAAAAAGAAGAGAGATTGAAAACATACCTTGAAATTGATGAAAATATAGAGACAGAAAAGTGTATGTATATGATGAGAAGAGAAA
GATAATTGT