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Detailed information on CNT3062250


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543822Arabidopsis lyrataBrassica napus24.9191.3891.32265forward
CNT30235546Arabidopsis lyrataBrassica oleracea2532.0592.11266forward
CNT30312471Arabidopsis lyrataCamelina sativa39.7656.4891.49423forward
CNT30261239Arabidopsis lyrataBrassica rapa34.7746.8487.3370forward
CNT30355778Arabidopsis lyrataLactuca sativa16.4522.2683.43175forward
CNT30573704Arabidopsis lyrataVitis vinifera17.223.4381.97183forward

Expression of CNT3062250

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIRDKGKVQCLLPLTRIQHKESTCCGEGSQLP*

>peptide 2 (57 aa)
MQLTLPPLLAMEVMSLLALRLTLPPLLEIEVMSLLALRVTGKAADDFKPVNGATMVA*

>peptide 3 (88 aa)
MNVLERELSIGEAWGLVGDETDALDLTVVVESDDPNEGIRVLLLAFLHFLQHLSGVGASEQWKLPHCPVPSIVVSGSVSVFTVHKSVL*

>peptide 4 (33 aa)
MTLLYLHAANSSPVACDGSNVVVGLAANSSAVA*

>peptide 5 (30 aa)
MEASTLSSTVHRSIRECFRVHGTQIRAINT*

Sequence

>CNT3062250
GCAATAAAAATTCTAAACCTAATTAAGCATCGGAAAAATCAAGACGCAAGAATATATAAAATACATATTCATAAATCAGACATTTGACAATCCGATATAA
AATGTCTCATAAAGAGAAAACAACACAGACAATAGGAATGAAATAAGCAGAGATAATTTATATGAATGTTTTAGAAAGGGAATTAAGCATCGGTGAAGCT
TGGGGGCTTGTAGGCGATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTAGGGTACTCCTTCTTGCATTCT
TGCACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGT
GTTCACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCGATGGACAATGATAGCCTCAACTTTGGTGTAGAAAATAAGCTTATTGACTTTG
GTTTTTAGCTATGTAAGAAAATAATATATAATGATTAGAGACAAAGGAAAGGTTCAGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTT
GTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAAAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCAT
ACCTATAATTCCCGAATCCAATTCCAATTATTCTATGTTTTGTTCAATTACACTAATTGCCATGACAAAAGACATCTTTCATTAATGACTTTACTTTACC
TTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTAATGTCGTTGTTGGCCTTGCGGCTAACTCTTCCGCCGTTGCTTGAGATAGAAGTAATGT
CGTTGTTGGCCTTGCGGGTGACCGGGAAAGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCTGGGGAGGTAACCACAGCGGC
AGAGGAGAGCATAGAGGAAGCCATCACAACTTCTTCTTCTTTTGCTCTTTTCTCTTACTTAATT