Detailed information on CNT3062126


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30479769Arabidopsis lyrataArabidopsis halleri43.2258.1498.42443forward

Expression of CNT3062126

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEASTLSSTVHRSIRECFRVHGTQIRAINT*

>peptide 2 (33 aa)
MTLLYLHAANSSPVACDGSNVVVGLAGDRESSG*

>peptide 3 (32 aa)
MIRDKGKVQCLLPLTRIQHKESTCCGEGSQLP*

>peptide 4 (39 aa)
MQLTLPPLLAMEVMSLLALRVTGKAADDFKPENGATMVA*

>peptide 5 (88 aa)
MNVLERELSIGEAWGLVGDETDALDLTVVVESDDPNEGIRVLLLAFLHFLQHLSGVGASEQWKLPHCPVPSIVVSGSVSVFTVHKSVL*

Sequence

>CNT3062126
GCAATAAAAATTCTAAACCTAATTAAGCATCGGAAAAATCAAGACGCAAGAATATATAAAATACATATTCATAAATCAGACATTTGACAATCCGATATAA
AATGTCTCATAAAGAGAAAACAACACAGACAATAGGAATGAAATAAGCAGAGATAATTTATATGAATGTTTTAGAAAGGGAATTAAGCATCGGTGAAGCT
TGGGGGCTTGTAGGCGATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTAGGGTACTCCTTCTTGCATTCT
TGCACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGT
GTTCACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCGATGGACAATGATAGCCTCAACTTTGGTGTAGAAAATAAGCTTATTGACTTTG
GTTTTTAGCTATGTAAGAAAATAATATATAATGATTAGAGACAAAGGAAAGGTTCAGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTT
GTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAAAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCAT
ACCTATAATTCCCGAATCCAATTCCAATTATTCTATGTTTTGTTCAATTACACTAATTGCCATGACAAAAGACATCTTTCATTAATGACTTTACTTTACC
TTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGCAGCGGATGACTTCAAGCCGGAGA
ATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATCACAACTTCTTCTTCTTTTGCTCTTTTCTC
TTACTTAATTGTTTTTCTATTGGTC